Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6L84_RS06080 Genome accession   NZ_CP077224
Coordinates   1223733..1225535 (-) Length   600 a.a.
NCBI ID   WP_060554157.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1218733..1230535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS06065 (I6L84_06065) - 1221198..1221683 (-) 486 WP_008809505.1 LURP-one-related/scramblase family protein -
  I6L84_RS06070 (I6L84_06070) prsA 1221913..1222842 (-) 930 WP_012130637.1 peptidylprolyl isomerase PrsA -
  I6L84_RS06075 (I6L84_06075) - 1223045..1223731 (-) 687 WP_060554158.1 O-methyltransferase -
  I6L84_RS06080 (I6L84_06080) pepF 1223733..1225535 (-) 1803 WP_060554157.1 oligoendopeptidase F Regulator
  I6L84_RS06085 (I6L84_06085) - 1225724..1226110 (-) 387 WP_060554156.1 DUF1310 family protein -
  I6L84_RS06090 (I6L84_06090) - 1226312..1226716 (-) 405 WP_060554155.1 DUF1310 family protein -
  I6L84_RS06095 (I6L84_06095) coiA 1226871..1227857 (-) 987 WP_060554154.1 competence protein CoiA Machinery gene
  I6L84_RS06100 (I6L84_06100) celB 1227950..1229305 (-) 1356 WP_060554153.1 PTS cellobiose transporter subunit IIC -
  I6L84_RS06105 (I6L84_06105) - 1229326..1229811 (-) 486 WP_060554152.1 hypothetical protein -
  I6L84_RS06110 (I6L84_06110) - 1229839..1230156 (-) 318 WP_060554151.1 PTS cellobiose transporter subunit IIA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69386.41 Da        Isoelectric Point: 4.4968

>NTDB_id=580014 I6L84_RS06080 WP_060554157.1 1223733..1225535(-) (pepF) [Streptococcus gordonii strain FDAARGOS 1454]
MAKQRNEIEEKYTWDLSTIFPTDEAFETELAQVSEELKNASNLAGHLLDSAESLLTTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTIYSEFGQTFAFYEPEFMEITEDQYQAFLAEKPELQTYQHYFDKLLQKKEHILTQREEELLAGA
GEIFGAASETFAILDNADIVFPVVHNEKGEEVQLTHGNYISLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVQ
NYNAKVRKFSSAREAALSANFIPESVYDSLVSAVDKHLPLLQRYIALRAKILGISDLKMYDVYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLKKEDNLQIQFEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=580014 I6L84_RS06080 WP_060554157.1 1223733..1225535(-) (pepF) [Streptococcus gordonii strain FDAARGOS 1454]
ATGGCTAAACAAAGAAATGAAATTGAAGAAAAATATACATGGGATTTAAGTACGATTTTCCCTACAGATGAAGCCTTTGA
GACTGAACTTGCACAGGTTTCTGAAGAATTAAAAAATGCAAGTAATCTAGCAGGACATCTGCTGGATTCGGCAGAAAGTC
TTTTGACAACAACGGAAATTCAATTAGACTTGATGCGCCGTATTGAGAAACTTTATTCTTATGCTCACATGAAGAATGAC
CAGGATACTCGTGTGGCAAAATATCAGGAATACCAAGCTAAAGGAATGACTATTTACAGTGAGTTTGGCCAAACTTTTGC
TTTCTATGAGCCAGAATTCATGGAAATTACAGAAGACCAATACCAAGCTTTTTTGGCTGAAAAACCTGAACTACAAACTT
ATCAACATTATTTTGATAAGCTTTTGCAGAAGAAGGAACACATCCTGACCCAGCGTGAAGAGGAGTTGTTGGCTGGTGCT
GGAGAAATCTTTGGTGCTGCCAGTGAAACCTTTGCTATTTTGGACAATGCGGATATCGTCTTTCCAGTAGTTCACAATGA
AAAGGGCGAAGAAGTCCAGTTGACACATGGGAACTATATTTCTCTAGTAGAGTCTAAAAATCGAGAAGTTCGTAAGGAAG
CTTATGAAGCTCTTTATAGTGTTTATGAGCAGTATCAGCATACTTATGCTAAGACCTTGCAGACAAATGTTAAGGTTCAA
AATTACAACGCTAAAGTCCGCAAGTTCTCATCTGCCCGTGAGGCGGCTTTATCGGCTAACTTTATCCCGGAAAGTGTCTA
TGATAGCTTGGTTTCTGCTGTAGATAAACACCTTCCTCTGTTACAACGTTATATTGCCTTGCGAGCAAAGATTTTGGGTA
TTTCTGATTTGAAGATGTACGATGTTTATACACCACTATCAGAGACAGACTACAAATTCACTTATGAGGAAGCCTTGGCT
AAGTCTGAGGAAGTCTTGGCAATTTTGGGTGAGGATTATTTGAGTCGAGTGAAGACAGCCTTCTCAGAGCGCTGGATTGA
TGTTTATGAAAATCAAGGTAAGCGCTCAGGAGCATACTCGGGTGGCTCTTATGATACCAATGCCTTTATGTTGCTTAACT
GGCAGGATACACTAGATAATCTCTTTACTTTGGTGCATGAGACAGGCCACAGTATGCACTCCAGTTATACTCGTGAGACC
CAGCCTTATGTTTACGGAGACTATTCTATCTTCCTAGCTGAGATTGCTTCAACGACCAATGAAAATATCCTGACAGAGAA
GCTCTTGGAAGAAGTAGAAGACGATGCAACCCGATTTGCGATTCTTAATCACTTTTTGGATGGCTTTAGAGGAACGGTCT
TCCGTCAAACTCAGTTTGCTGAGTTCGAGCATGCTATCCACAAGGCTGACCAAGAAGGACAAGTGTTGACTAGCGAGTTT
CTCAATGAGCTATATGCAGACTTAAACGAGAAATACTACGGCTTGAAAAAAGAAGACAATCTGCAGATTCAGTTCGAATG
GGCACGGATTCCTCACTTCTACTATAATTATTATGTTTTCCAATACTCTACAGGATTTGCAGCTGCCTCGGCCTTGGCTG
AAAAGATTGTCCATGGTAGCCAAGAAGACAAGGACAAATATCTGGACTATCTCAAAGCTGGGAACTCTGACTATCCTCTC
AATGTCATCAAAAAAGCAGGTGTGGATATGGAAAAAGAAGACTATCTAAATGCTGCCTTTGCAGTCTTCGAACGCCGCTT
GGATGAATTTGAAGCTTTGGTAGAAAAGTTGGGATTAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.792

99.333

0.683