Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   I6L84_RS00215 Genome accession   NZ_CP077224
Coordinates   48276..49040 (-) Length   254 a.a.
NCBI ID   WP_045772585.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 49106..74275 48276..49040 flank 66


Gene organization within MGE regions


Location: 48276..74275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS00215 (I6L84_00215) spo0J 48276..49040 (-) 765 WP_045772585.1 ParB/RepB/Spo0J family partition protein Regulator
  I6L84_RS00220 (I6L84_00220) htrA 49106..50299 (-) 1194 WP_060553296.1 S1C family serine protease Regulator
  I6L84_RS00225 (I6L84_00225) rlmH 50493..50972 (+) 480 WP_060553297.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  I6L84_RS00235 (I6L84_00235) comC/comC2 51259..51411 (+) 153 WP_008808033.1 bacteriocin Regulator
  I6L84_RS00240 (I6L84_00240) comD/comD2 51427..52785 (+) 1359 WP_060553298.1 competence system sensor histidine kinase ComD Regulator
  I6L84_RS00245 (I6L84_00245) comE/comE2 52782..53549 (+) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  I6L84_RS00260 (I6L84_00260) ychF 53871..54986 (+) 1116 WP_008808030.1 redox-regulated ATPase YchF -
  I6L84_RS00265 (I6L84_00265) pth 55060..55629 (+) 570 WP_060553299.1 aminoacyl-tRNA hydrolase -
  I6L84_RS00270 (I6L84_00270) mfd 55622..59125 (+) 3504 WP_111705915.1 transcription-repair coupling factor -
  I6L84_RS00275 (I6L84_00275) - 59191..59457 (+) 267 WP_012131074.1 RNA-binding S4 domain-containing protein -
  I6L84_RS00280 (I6L84_00280) - 59450..59818 (+) 369 WP_012131073.1 septum formation initiator family protein -
  I6L84_RS00285 (I6L84_00285) - 59821..59940 (+) 120 WP_037622626.1 SP_0009 family protein -
  I6L84_RS00290 (I6L84_00290) - 59940..61220 (+) 1281 WP_045772579.1 serine hydrolase -
  I6L84_RS00295 (I6L84_00295) tilS 61217..62494 (+) 1278 WP_060553300.1 tRNA lysidine(34) synthetase TilS -
  I6L84_RS00300 (I6L84_00300) hpt 62499..63041 (+) 543 WP_060553301.1 hypoxanthine phosphoribosyltransferase -
  I6L84_RS00305 (I6L84_00305) ftsH 63060..65042 (+) 1983 WP_060553302.1 ATP-dependent zinc metalloprotease FtsH -
  I6L84_RS00320 (I6L84_00320) comR/comR2 65571..66053 (+) 483 WP_045772576.1 sigma-70 family RNA polymerase sigma factor Regulator
  I6L84_RS00430 (I6L84_00430) mreC 72958..73773 (+) 816 WP_060554277.1 rod shape-determining protein MreC -
  I6L84_RS00435 (I6L84_00435) mreD 73775..74275 (+) 501 WP_045773633.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29304.04 Da        Isoelectric Point: 9.4945

>NTDB_id=579987 I6L84_RS00215 WP_045772585.1 48276..49040(-) (spo0J) [Streptococcus gordonii strain FDAARGOS 1454]
MENYQYILIKDIHTNPYQPRKDFSIEKLNELANSIKENGLIQPIIVRKSSIIGYELLAGERRFRAAKIAGLTEIPALVKS
LSDDEMMKQAIIENLQREDLNPIEEAESYQHLIYKGLTHDEIAQIMGKSRPYITNLVRLLQLPDFVLKAVKEGHISQAHA
RLLIKLKEKDQKKWLEKIISSDISVRKLEKLLQTSPTKPKSENVQKIFIEEEEENLKKLLGVDVKISLSKKQTGKISISF
SNQEEYERIINSLK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=579987 I6L84_RS00215 WP_045772585.1 48276..49040(-) (spo0J) [Streptococcus gordonii strain FDAARGOS 1454]
ATGGAAAATTATCAATATATTTTAATTAAAGATATTCACACCAATCCCTATCAACCAAGAAAAGATTTTTCAATAGAGAA
ATTAAACGAGTTGGCAAATTCTATTAAAGAAAACGGATTAATCCAGCCTATTATCGTCAGGAAATCATCTATCATTGGAT
ACGAACTTTTAGCTGGGGAAAGAAGATTTAGGGCAGCTAAAATAGCAGGCTTAACTGAAATTCCTGCCTTAGTAAAATCA
CTAAGCGATGATGAAATGATGAAGCAGGCTATTATTGAAAATCTTCAAAGAGAGGATCTCAATCCAATAGAAGAAGCTGA
ATCTTATCAACATCTTATTTATAAGGGATTGACGCATGATGAAATCGCTCAGATTATGGGGAAATCAAGGCCTTATATTA
CAAATCTTGTTCGCTTGCTACAGCTACCTGATTTTGTCTTAAAAGCTGTAAAAGAAGGTCATATTTCTCAGGCTCATGCT
CGATTATTAATAAAACTTAAGGAAAAAGACCAGAAAAAATGGCTTGAAAAAATTATTTCTTCAGATATTTCTGTTAGAAA
ATTAGAGAAATTATTACAGACTTCTCCTACTAAGCCTAAGTCTGAAAATGTCCAAAAAATTTTTATAGAGGAAGAAGAAG
AAAATCTAAAGAAATTATTGGGAGTTGATGTAAAGATTAGTCTCTCTAAGAAACAAACTGGCAAAATCTCAATTTCTTTT
TCTAATCAGGAAGAATATGAAAGAATTATTAACAGTCTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.331

100

0.543