Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6L47_RS11940 Genome accession   NZ_CP077221
Coordinates   2622879..2624318 (-) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas sp. FDAARGOS 1417     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2617879..2629318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L47_RS11910 (I6L47_11910) - 2618147..2618887 (+) 741 WP_216947477.1 KDGP aldolase family protein -
  I6L47_RS11915 (I6L47_11915) - 2618995..2620899 (+) 1905 WP_021231840.1 transcription antiterminator -
  I6L47_RS11920 (I6L47_11920) npr 2620917..2621189 (-) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  I6L47_RS11925 (I6L47_11925) rapZ 2621210..2622076 (-) 867 WP_064339242.1 RNase adapter RapZ -
  I6L47_RS11930 (I6L47_11930) ptsN 2622122..2622568 (-) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6L47_RS11935 (I6L47_11935) hpf 2622571..2622858 (-) 288 WP_005336323.1 ribosome hibernation promoting factor -
  I6L47_RS11940 (I6L47_11940) rpoN/rpoN1 2622879..2624318 (-) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  I6L47_RS11945 (I6L47_11945) lptB 2624384..2625109 (-) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  I6L47_RS11950 (I6L47_11950) lptA 2625113..2625640 (-) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  I6L47_RS11955 (I6L47_11955) lptC 2625627..2626187 (-) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  I6L47_RS11960 (I6L47_11960) kdsC 2626184..2626738 (-) 555 WP_101530526.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  I6L47_RS11965 (I6L47_11965) - 2626738..2627733 (-) 996 WP_058057518.1 KpsF/GutQ family sugar-phosphate isomerase -
  I6L47_RS11970 (I6L47_11970) mlaF 2627941..2628741 (+) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=579950 I6L47_RS11940 WP_005336331.1 2622879..2624318(-) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1417]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=579950 I6L47_RS11940 WP_005336331.1 2622879..2624318(-) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1417]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGAGAGACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCGTTTA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGCGATGATGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAAGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGTCCCGGTAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATCCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATATCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6N7F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491