Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6L41_RS18245 Genome accession   NZ_CP077214
Coordinates   4013224..4014663 (+) Length   479 a.a.
NCBI ID   WP_005356667.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1411     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4008224..4019663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L41_RS18215 (I6L41_18215) mlaF 4008801..4009601 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  I6L41_RS18220 (I6L41_18220) - 4009809..4010804 (+) 996 WP_005356672.1 KpsF/GutQ family sugar-phosphate isomerase -
  I6L41_RS18225 (I6L41_18225) kdsC 4010804..4011358 (+) 555 WP_101530526.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  I6L41_RS18230 (I6L41_18230) lptC 4011355..4011915 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  I6L41_RS18235 (I6L41_18235) lptA 4011902..4012429 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  I6L41_RS18240 (I6L41_18240) lptB 4012433..4013158 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  I6L41_RS18245 (I6L41_18245) rpoN/rpoN1 4013224..4014663 (+) 1440 WP_005356667.1 RNA polymerase factor sigma-54 Machinery gene
  I6L41_RS18250 (I6L41_18250) hpf 4014684..4014971 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  I6L41_RS18255 (I6L41_18255) ptsN 4014974..4015420 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6L41_RS18260 (I6L41_18260) rapZ 4015466..4016332 (+) 867 WP_216960494.1 RNase adapter RapZ -
  I6L41_RS18265 (I6L41_18265) npr 4016353..4016625 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  I6L41_RS18270 (I6L41_18270) - 4016643..4018547 (-) 1905 WP_120416079.1 transcription antiterminator -
  I6L41_RS18275 (I6L41_18275) - 4018655..4019395 (-) 741 WP_202004325.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53759.67 Da        Isoelectric Point: 4.3281

>NTDB_id=579930 I6L41_RS18245 WP_005356667.1 4013224..4014663(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1411]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVELED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=579930 I6L41_RS18245 WP_005356667.1 4013224..4014663(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1411]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCATGATGG
GGAAGATAGCGTCTATCAGGGGGAAACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGAGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGCGATGATGTAGAGGTGGAGCTCGATGAGGTCGAAGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAGTATGACCCGCAGACCCCTT
GGCTCAACGAGGCAAAAGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGCCCCGGCAATGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCAGTGGTCAAGAAGGGTAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATTCGGGTCAACGAGACCTACGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATTCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCTTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491