Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MUA13_RS07235 Genome accession   NZ_CP094787
Coordinates   1512540..1513166 (+) Length   208 a.a.
NCBI ID   WP_252570542.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6168     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1507540..1518166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA13_RS07200 (MUA13_07190) - 1508524..1508856 (-) 333 WP_252570544.1 DUF4889 domain-containing protein -
  MUA13_RS07205 (MUA13_07195) - 1508940..1510085 (-) 1146 WP_000487150.1 class I SAM-dependent RNA methyltransferase -
  MUA13_RS07215 (MUA13_07205) gpsB 1510736..1511080 (-) 345 WP_001286320.1 cell division regulator GpsB -
  MUA13_RS07220 (MUA13_07210) - 1511094..1511657 (-) 564 WP_000241308.1 DUF1273 domain-containing protein -
  MUA13_RS07225 (MUA13_07215) - 1511650..1512000 (-) 351 WP_001000805.1 YppE family protein -
  MUA13_RS07230 (MUA13_07220) - 1512055..1512234 (-) 180 WP_001788819.1 hypothetical protein -
  MUA13_RS07235 (MUA13_07225) recU 1512540..1513166 (+) 627 WP_252570542.1 Holliday junction resolvase RecU Machinery gene
  MUA13_RS07240 (MUA13_07230) - 1513163..1515346 (+) 2184 WP_000138351.1 transglycosylase domain-containing protein -
  MUA13_RS07245 (MUA13_07235) - 1515911..1516252 (-) 342 WP_252570539.1 YpoC family protein -
  MUA13_RS07250 (MUA13_07240) nth 1516257..1516916 (-) 660 WP_262522318.1 endonuclease III -
  MUA13_RS07255 (MUA13_07245) - 1516906..1517592 (-) 687 WP_000362220.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24471.83 Da        Isoelectric Point: 9.7143

>NTDB_id=579855 MUA13_RS07235 WP_252570542.1 1512540..1513166(+) (recU) [Staphylococcus aureus strain IVB6168]
MNYPNGRPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=579855 MUA13_RS07235 WP_252570542.1 1512540..1513166(+) (recU) [Staphylococcus aureus strain IVB6168]
ATGAATTATCCAAATGGTAGACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATACGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAGTATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

52.657

99.519

0.524