Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I6L28_RS01715 Genome accession   NZ_CP077205
Coordinates   361295..361621 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 356295..366621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS01695 (I6L28_01695) - 356397..357023 (-) 627 WP_125739235.1 FHA domain-containing protein -
  I6L28_RS01700 (I6L28_01700) gspD 357064..359340 (-) 2277 WP_057106350.1 type II secretion system secretin GspD -
  I6L28_RS01705 (I6L28_01705) - 359382..360218 (-) 837 WP_061874303.1 type II secretion system protein N -
  I6L28_RS01710 (I6L28_01710) gspN 360218..360961 (-) 744 WP_016144128.1 type II secretion system protein N -
  I6L28_RS01715 (I6L28_01715) hns 361295..361621 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  I6L28_RS01720 (I6L28_01720) - 361816..362256 (-) 441 WP_216946746.1 acyl-CoA thioesterase -
  I6L28_RS01725 (I6L28_01725) - 362264..363457 (-) 1194 WP_031947173.1 membrane protein -
  I6L28_RS01730 (I6L28_01730) - 363467..364309 (-) 843 WP_216946747.1 hypothetical protein -
  I6L28_RS01735 (I6L28_01735) hemD 364318..365085 (-) 768 WP_216946748.1 uroporphyrinogen-III synthase -
  I6L28_RS01740 (I6L28_01740) hemC 365089..366006 (-) 918 WP_212749389.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=579766 I6L28_RS01715 WP_000801427.1 361295..361621(-) (hns) [Acinetobacter pittii strain FDAARGOS 1398]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=579766 I6L28_RS01715 WP_000801427.1 361295..361621(-) (hns) [Acinetobacter pittii strain FDAARGOS 1398]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCGATTGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTAGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1