Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   I6L28_RS01210 Genome accession   NZ_CP077205
Coordinates   250567..252795 (+) Length   742 a.a.
NCBI ID   WP_216946716.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 245567..257795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS01185 (I6L28_01185) lnt 246085..247644 (+) 1560 WP_081175418.1 apolipoprotein N-acyltransferase -
  I6L28_RS01190 (I6L28_01190) csaA 247646..247984 (-) 339 WP_031947232.1 tRNA-binding protein -
  I6L28_RS01195 (I6L28_01195) - 248130..248474 (-) 345 WP_031947231.1 hypothetical protein -
  I6L28_RS01200 (I6L28_01200) gspG 248743..249192 (-) 450 WP_227513998.1 type II secretion system major pseudopilin GspG -
  I6L28_RS01205 (I6L28_01205) gspF 249213..250418 (-) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  I6L28_RS01210 (I6L28_01210) priA 250567..252795 (+) 2229 WP_216946716.1 primosomal protein N' Machinery gene
  I6L28_RS01215 (I6L28_01215) kefB 252872..254716 (+) 1845 WP_216946717.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  I6L28_RS01220 (I6L28_01220) hslO 254880..255755 (+) 876 WP_081175424.1 Hsp33 family molecular chaperone HslO -
  I6L28_RS01225 (I6L28_01225) - 255893..256504 (+) 612 WP_057104864.1 LysE family translocator -
  I6L28_RS01230 (I6L28_01230) cbpA 256651..257607 (+) 957 WP_216946718.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84042.84 Da        Isoelectric Point: 8.6629

>NTDB_id=579763 I6L28_RS01210 WP_216946716.1 250567..252795(+) (priA) [Acinetobacter pittii strain FDAARGOS 1398]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERARVGSRVAISFGRQNLIGIITEKVNPNESFTGTFQLKAISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPEHEVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIDKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQVAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LLHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=579763 I6L28_RS01210 WP_216946716.1 250567..252795(+) (priA) [Acinetobacter pittii strain FDAARGOS 1398]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCCCGCGTAGGCTCACGCGTCGCTATTTCATTTGGACGCCAAAACCTGA
TTGGCATCATTACTGAAAAAGTAAACCCAAATGAATCATTTACAGGCACCTTTCAACTTAAAGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCAGCCCAGTATTACCAATTTCCAATTGGTGA
GGTCATGCAAACCGCCCTACCTGCATTATTACGTCAGGGCAAACCGATGGATGTTTTGTTTCATCTTTGGAAAATTACAC
CATGTGATAATGTTGAAGCACTTCTTAAACGTTCTGTTAAGCAACAAGACGCGTATCAAATTTTAAAGTTACACCCTGCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGTGTAGAAACGGCCACGCTTAAAGCACTTCAAAAGAAAGGACTGGTTGA
CTGTACGCTTGAACCACATGACTTTAGCCCATCGCCTGTTCAATTGGCACAAATGCCGCTTACACTCAATGAAGACCAAA
AGAAAGCAACCCAGCACGTCGTAAACGCACAGCATCAATACCAAGCCTTCTTGTTAGATGGTTTAACTGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTCCCAGAAATTGGTCT
AACCCCTCAAACGATTTCTCGTTTTAAATCGCGTTTTAACTGTGATATTGCTCTATTACACTCGGGCTTAAATGACTCTA
AACGTTTACAAGCATGGCAACAGGCTCAGACTGGCAAAGCATCTATTATTTTAGGAACACGCTCTGCGATCTATACGCCA
CTGCCACGTTTGGGCTTAATCATTTTAGATGAAGAACATGACTTGTCTTATAAACAGCAAGAAGGCTTCCGCTACCATGC
ACGTGATGTCGCCCTGTACCGTGGGCACTTACAAAACTGCCCTGTTATTTTAGGTTCAGCAACTCCAAGCATCGATAGTT
ATTATTTGGTCGAAACTGGCAAGTTAACAGCGCTTCAGCTTAACCAACGTGCAGGCCATGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAACAACATGGTATTAGCCAGCCGTTAATAGAACAAATTAAAAACACCTTAGCCAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTGTGTGAAAGCTGTGGCTGGCAAGCAA
ATTGTCCGCATTGTGATGCACATTTTACTTTGCATACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGCACTGTT
CATCGCTTGCCCGATCACTGCCCTGAATGTCAGCAAAAAAGCCTAAAAACCTTGGGTGCTGGAACAGCTAAGGTCGAAGA
ACACTTACAAGAATTATTTCCCGAACATGAGGTGATTCGGGTTGACCGTGACAGCACGAGTCGTGTCGGAAGCTGGCAAA
AAATTTATGATCGTATTCACCAAAACAAACCAACAATTTTGCTCGGCACTCAAATGTTGGCAAAAGGCCATCATTTTCCA
CATGTCACCTTAGTTGCTATTTTAGATATTGATGCAGGCTTACTGAGTGTCGATATTCGTGCGCCAGAACGTACTGCGCA
GTTAATTGTACAAGTCGCGGGACGTGCAGGCCGTGGCGAACATAAAGGCCATGTTTACTTACAAACCCTAAGACCAGATC
ACCCTTTACTCACCACACTCATCGACAAAGATTATCGGGCGGTTGCCAAACAGACACTTGCAGAACGTAAAGTCGCATTG
CTGCCGCCTTATCGCTATGCCGTACTGATACGTGCAGAGTCCAAAGACCGTGACTATACCTTACATTTTTTAAATGAAGC
TGCAGAGCAACTTCGCCAAGTGGCTGGTGAAATTGTTGATATTTGGGGACCTATTCCAGCTCCTATGGAGCGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGTGCTCGCCTACATTTTTACTTAAGACAATGGTGGTCACAA
TTATTGCATGCGCCGCGCCAGCATCAACTCAGGCTATCAATTGACGTCGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-370)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.17

100

0.972