Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6L32_RS04935 Genome accession   NZ_CP077201
Coordinates   1025471..1026910 (-) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1402     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1020471..1031910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L32_RS04905 (I6L32_04905) - 1020750..1021490 (+) 741 WP_216944762.1 KDGP aldolase family protein -
  I6L32_RS04910 (I6L32_04910) - 1021594..1023498 (+) 1905 WP_216944763.1 transcription antiterminator -
  I6L32_RS04915 (I6L32_04915) npr 1023514..1023786 (-) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  I6L32_RS04920 (I6L32_04920) rapZ 1023807..1024673 (-) 867 WP_010675869.1 RNase adapter RapZ -
  I6L32_RS04925 (I6L32_04925) ptsN 1024714..1025160 (-) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6L32_RS04930 (I6L32_04930) hpf 1025163..1025450 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  I6L32_RS04935 (I6L32_04935) rpoN/rpoN1 1025471..1026910 (-) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  I6L32_RS04940 (I6L32_04940) lptB 1026976..1027701 (-) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  I6L32_RS04945 (I6L32_04945) lptA 1027714..1028232 (-) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  I6L32_RS04950 (I6L32_04950) lptC 1028219..1028779 (-) 561 WP_216944764.1 LPS export ABC transporter periplasmic protein LptC -
  I6L32_RS04955 (I6L32_04955) kdsC 1028776..1029330 (-) 555 WP_042864828.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  I6L32_RS04960 (I6L32_04960) - 1029330..1030325 (-) 996 WP_216944765.1 KpsF/GutQ family sugar-phosphate isomerase -
  I6L32_RS04965 (I6L32_04965) mlaF 1030532..1031332 (+) 801 WP_216944766.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=579740 I6L32_RS04935 WP_039040474.1 1025471..1026910(-) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1402]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=579740 I6L32_RS04935 WP_039040474.1 1025471..1026910(-) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1402]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGTATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGTCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACTCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTACTGGATCTTATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ACTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCTCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482