Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MUA59_RS03830 Genome accession   NZ_CP094782
Coordinates   791193..792275 (+) Length   360 a.a.
NCBI ID   WP_262607931.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6172     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 786193..797275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA59_RS03810 (MUA59_03795) - 786563..787633 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  MUA59_RS03815 (MUA59_03800) - 787951..789006 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  MUA59_RS03820 (MUA59_03805) - 789178..789819 (-) 642 WP_262537174.1 YigZ family protein -
  MUA59_RS03825 (MUA59_03810) fakB1 789963..790829 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  MUA59_RS03830 (MUA59_03815) comFA 791193..792275 (+) 1083 WP_262607931.1 DEAD/DEAH box helicase Machinery gene
  MUA59_RS03835 (MUA59_03820) - 792268..792942 (+) 675 WP_262607932.1 ComF family protein -
  MUA59_RS03840 (MUA59_03825) hpf 793003..793575 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  MUA59_RS03845 (MUA59_03830) secA 793989..796520 (+) 2532 WP_262613892.1 preprotein translocase subunit SecA -
  MUA59_RS03850 (MUA59_03835) - 796562..796660 (+) 99 Protein_748 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41980.44 Da        Isoelectric Point: 9.6802

>NTDB_id=579645 MUA59_RS03830 WP_262607931.1 791193..792275(+) (comFA) [Staphylococcus aureus strain IVB6172]
MDNVTRYKITESSQSASQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPNENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=579645 MUA59_RS03830 WP_262607931.1 791193..792275(+) (comFA) [Staphylococcus aureus strain IVB6172]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTGCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATCCCCAACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACATTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369