Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SPYKS030_RS03985 Genome accession   NZ_AP018337
Coordinates   725393..727054 (+) Length   553 a.a.
NCBI ID   WP_002983909.1    Uniprot ID   A0A0H2UW49
Organism   Streptococcus pyogenes strain KS030     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 720393..732054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYKS030_RS03955 (SPYKS030_07160) - 720682..721536 (+) 855 WP_002989114.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  SPYKS030_RS03960 (SPYKS030_07170) xseA 721689..723029 (+) 1341 WP_002992349.1 exodeoxyribonuclease VII large subunit -
  SPYKS030_RS03965 (SPYKS030_07180) - 723007..723222 (+) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  SPYKS030_RS03970 (SPYKS030_07190) - 723222..724094 (+) 873 WP_011054706.1 polyprenyl synthetase family protein -
  SPYKS030_RS03975 (SPYKS030_07200) - 724087..724914 (+) 828 WP_011054705.1 TlyA family RNA methyltransferase -
  SPYKS030_RS03980 (SPYKS030_07210) - 724901..725371 (+) 471 WP_002983907.1 arginine repressor -
  SPYKS030_RS03985 (SPYKS030_07220) recN 725393..727054 (+) 1662 WP_002983909.1 DNA repair protein RecN Machinery gene
  SPYKS030_RS03990 (SPYKS030_07230) - 727226..728170 (+) 945 WP_011054704.1 LPXTG cell wall anchor domain-containing protein -
  SPYKS030_RS03995 (SPYKS030_07240) - 728398..729237 (+) 840 WP_011054703.1 DegV family protein -
  SPYKS030_RS04000 (SPYKS030_07250) - 729230..730072 (+) 843 WP_002992620.1 SGNH/GDSL hydrolase family protein -
  SPYKS030_RS04005 (SPYKS030_07260) - 730050..730637 (+) 588 WP_002989129.1 YpmS family protein -
  SPYKS030_RS04010 (SPYKS030_07270) - 730736..731011 (+) 276 WP_002983920.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62285.44 Da        Isoelectric Point: 4.6120

>NTDB_id=57963 SPYKS030_RS03985 WP_002983909.1 725393..727054(+) (recN) [Streptococcus pyogenes strain KS030]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNV
NDVLDYYDNIIKEYQLLTGDDLSSGDLESELKALEKQLVAAATNLSERRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=57963 SPYKS030_RS03985 WP_002983909.1 725393..727054(+) (recN) [Streptococcus pyogenes strain KS030]
ATGTTATTAGAAATTTCTATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGAGATATCTTTGCTAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGCTGCTGCCTTGAGTCGAGGTGAGGATGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAGTACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATTATCAAAGAATACCAGCTATTAACAGGAGACGACTTGTCTTCAGGGGATCT
AGAATCAGAATTGAAAGCCTTAGAAAAACAATTGGTTGCTGCAGCCACTAACTTGAGTGAACGCCGCCATCAATTGGCAG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCTATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAACTACTTGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UW49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.452

Multiple sequence alignment