Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SPN994039_RS05835 Genome accession   NC_021005
Coordinates   1109323..1110132 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae SPN994039     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1104323..1115132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN994039_RS05815 (SPN994039_10810) - 1106657..1107643 (+) 987 WP_000204733.1 L-lactate dehydrogenase -
  SPN994039_RS05820 (SPN994039_10820) - 1107944..1108687 (-) 744 Protein_1129 ion channel -
  SPN994039_RS05825 (SPN994039_10830) - 1108734..1108988 (-) 255 WP_001812387.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SPN994039_RS05830 (SPN994039_10840) - 1108990..1109232 (-) 243 WP_000208080.1 DUF6290 family protein -
  SPN994039_RS05835 (SPN994039_10850) vicX 1109323..1110132 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  SPN994039_RS05840 (SPN994039_10860) micB 1110134..1111483 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SPN994039_RS05845 (SPN994039_10870) micA 1111476..1112180 (-) 705 WP_000722076.1 response regulator YycF Regulator
  SPN994039_RS05850 (SPN994039_10880) mutY 1112235..1113410 (-) 1176 WP_000886147.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=57938 SPN994039_RS05835 WP_001289493.1 1109323..1110132(-) (vicX) [Streptococcus pneumoniae SPN994039]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=57938 SPN994039_RS05835 WP_001289493.1 1109323..1110132(-) (vicX) [Streptococcus pneumoniae SPN994039]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment