Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MUA47_RS07605 Genome accession   NZ_CP094773
Coordinates   1596549..1598228 (-) Length   559 a.a.
NCBI ID   WP_000942210.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6195     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1591549..1603228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA47_RS07585 (MUA47_07590) - 1591699..1592973 (-) 1275 WP_000406850.1 dihydrolipoamide acetyltransferase family protein -
  MUA47_RS07590 (MUA47_07595) - 1592986..1593969 (-) 984 WP_001096637.1 alpha-ketoacid dehydrogenase subunit beta -
  MUA47_RS07595 (MUA47_07600) - 1593969..1594961 (-) 993 WP_000568355.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  MUA47_RS07600 (MUA47_07605) lpdA 1594977..1596398 (-) 1422 WP_262634630.1 dihydrolipoyl dehydrogenase -
  MUA47_RS07605 (MUA47_07610) recN 1596549..1598228 (-) 1680 WP_000942210.1 DNA repair protein RecN Machinery gene
  MUA47_RS07610 (MUA47_07615) ahrC 1598244..1598696 (-) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  MUA47_RS07615 (MUA47_07620) - 1599127..1600008 (-) 882 WP_000183374.1 polyprenyl synthetase family protein -
  MUA47_RS07620 (MUA47_07625) - 1599986..1600216 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  MUA47_RS07625 (MUA47_07630) xseA 1600209..1601546 (-) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  MUA47_RS07630 (MUA47_07635) nusB 1601563..1601952 (-) 390 WP_250426018.1 transcription antitermination factor NusB -
  MUA47_RS07635 (MUA47_07640) - 1602012..1602374 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64265.84 Da        Isoelectric Point: 4.7316

>NTDB_id=579328 MUA47_RS07605 WP_000942210.1 1596549..1598228(-) (recN) [Staphylococcus aureus strain IVB6195]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=579328 MUA47_RS07605 WP_000942210.1 1596549..1598228(-) (recN) [Staphylococcus aureus strain IVB6195]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAATCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTTCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGTATTCAAAACTCTGAAAAATTAAGTTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCTAAGCAGCGTCGTATAGTTG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATATCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGTGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44