Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KSF55_RS00250 Genome accession   NZ_CP077099
Coordinates   61769..63523 (+) Length   584 a.a.
NCBI ID   WP_105960921.1    Uniprot ID   -
Organism   Lactiplantibacillus pentosus strain 9D3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 56769..68523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSF55_RS00230 (KSF55_00230) - 56976..58394 (-) 1419 WP_225422362.1 MDR family MFS transporter -
  KSF55_RS00235 (KSF55_00235) - 58415..59038 (-) 624 WP_105960918.1 NAD(P)H-dependent oxidoreductase -
  KSF55_RS00240 (KSF55_00240) - 59243..59692 (+) 450 WP_105960919.1 MarR family winged helix-turn-helix transcriptional regulator -
  KSF55_RS00245 (KSF55_00245) rcrP 60006..61769 (+) 1764 WP_252269325.1 ABC transporter ATP-binding protein Regulator
  KSF55_RS00250 (KSF55_00250) rcrQ 61769..63523 (+) 1755 WP_105960921.1 ABC transporter ATP-binding protein Regulator
  KSF55_RS00255 (KSF55_00255) - 63702..64322 (+) 621 WP_252269327.1 hypothetical protein -
  KSF55_RS00260 (KSF55_00260) - 64510..65091 (+) 582 WP_162937103.1 uracil-DNA glycosylase family protein -
  KSF55_RS00265 (KSF55_00265) - 65211..65720 (+) 510 WP_252269329.1 plasmid pRiA4b ORF-3 family protein -
  KSF55_RS00270 (KSF55_00270) - 65860..66015 (+) 156 WP_162937058.1 hypothetical protein -
  KSF55_RS00275 (KSF55_00275) - 65984..66352 (+) 369 WP_252269332.1 6-carboxytetrahydropterin synthase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64008.33 Da        Isoelectric Point: 4.7916

>NTDB_id=579276 KSF55_RS00250 WP_105960921.1 61769..63523(+) (rcrQ) [Lactiplantibacillus pentosus strain 9D3]
MDKPKTGILAGIRKYGKNYLYAMIVAALMAVVGNIATLLGPNQLSRITNLISKGLRGSIDLQAIGQIVLVLAIIYAVGAI
MSYGQGYIMATVSQAFTRDLRNNVSHKINRLPLTYFDEHDEGDTLSRVTNDLDTFGQSLNQSLGTLISSVVLIVGSIIMM
TYTNWILSLTAVVSAVLGMTITVLLLRKSQGYFTSQQQQLAEVSGYVEEIYSGHEVVKLYNDTDNAVKTFTSLNTKLYNS
VWKSQFLSGIMQPLMTFIGNFGYVAVSVVGALLVLNGTASIGVIVAFMVFVRIFTQPLSQITQAFSSLQSAQAAFRRVLD
FLDEDEASTDEQGVATIERASGKIDFDHVNFEYEPGEPIIKDFSAHVKPGQKVAIVGPTGAGKTTLISLLMKFYQYQGGT
IKLDDQDIANLSAADVRSQFDMVLQDAWLFEDTVMANLKYNQPDIPDETVYKATEVVGLDHFIKTLPDGYDTVLDDSVSL
SVGQKQLMTIARALVRNKPMLILDEATSSVDTRTEEQLQKAMDVLTKGRTSLVIAHRLSTIKNADNILVLNYGEVIESGT
HDELIAADGFYANLYNSQFESLTA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=579276 KSF55_RS00250 WP_105960921.1 61769..63523(+) (rcrQ) [Lactiplantibacillus pentosus strain 9D3]
ATGGACAAACCAAAAACAGGAATTCTTGCTGGAATTCGTAAATATGGAAAAAACTATTTATACGCGATGATTGTCGCAGC
GCTAATGGCAGTTGTCGGTAATATTGCGACGTTGTTAGGGCCAAATCAGCTCAGTCGAATCACCAATCTGATTTCAAAGG
GCTTACGAGGCAGTATCGATCTACAAGCGATTGGTCAAATTGTGCTTGTCCTAGCGATTATCTATGCTGTTGGGGCTATC
ATGTCATATGGTCAAGGTTATATCATGGCAACGGTCTCGCAAGCATTCACGCGGGATCTGCGGAACAATGTCTCTCACAA
AATCAACCGATTACCATTGACTTACTTTGACGAACACGATGAAGGGGACACCTTATCGCGAGTCACGAACGATTTGGACA
CTTTTGGACAGTCGCTGAATCAAAGCTTGGGAACGTTGATTTCATCGGTTGTTTTAATCGTCGGGTCGATTATCATGATG
ACCTATACTAACTGGATCCTCAGTTTAACGGCAGTTGTTTCCGCTGTGCTGGGGATGACCATCACGGTCTTGTTATTACG
AAAGTCTCAGGGGTACTTCACGAGCCAACAACAGCAGTTAGCGGAAGTATCCGGGTATGTTGAAGAAATCTATTCCGGAC
ATGAGGTCGTTAAGTTATATAACGATACTGATAACGCGGTCAAAACTTTTACATCATTGAATACGAAACTTTACAATTCC
GTTTGGAAGTCACAATTCCTATCTGGTATTATGCAGCCATTAATGACTTTTATTGGGAATTTCGGTTACGTTGCTGTGAG
TGTTGTCGGTGCGTTACTAGTGCTTAACGGCACGGCTAGCATTGGCGTCATCGTTGCTTTCATGGTCTTTGTCAGAATCT
TTACACAGCCACTATCACAGATCACGCAGGCTTTCTCTAGCTTGCAATCTGCTCAGGCAGCCTTCAGACGAGTTCTTGAT
TTCCTTGACGAAGACGAAGCAAGTACAGATGAACAAGGTGTAGCGACGATTGAACGAGCAAGTGGCAAAATCGATTTTGA
TCACGTTAATTTTGAATACGAGCCCGGAGAACCAATTATTAAAGATTTCTCAGCACATGTAAAACCAGGGCAAAAGGTAG
CCATTGTTGGTCCGACGGGCGCTGGTAAAACGACTTTGATTAGTCTGTTGATGAAATTTTATCAGTATCAAGGTGGAACG
ATTAAGCTGGATGATCAAGATATTGCTAACTTGTCAGCAGCGGACGTTCGGTCACAATTTGATATGGTGCTGCAAGATGC
TTGGCTATTTGAAGACACCGTTATGGCTAATTTGAAGTATAATCAGCCGGATATTCCAGATGAGACGGTCTATAAAGCGA
CCGAGGTCGTTGGCTTAGATCACTTCATCAAGACTCTACCGGATGGTTATGATACCGTCTTAGATGATTCAGTCAGTCTA
TCCGTTGGGCAAAAGCAATTAATGACGATTGCGCGTGCTTTGGTTCGCAATAAGCCGATGCTGATTTTAGATGAAGCCAC
AAGTTCGGTCGATACTAGAACGGAAGAACAACTGCAAAAAGCCATGGATGTGTTGACTAAGGGTCGGACTTCATTAGTTA
TTGCTCACCGGTTATCGACGATCAAAAATGCGGACAATATTTTAGTACTAAATTACGGTGAAGTCATCGAGTCCGGGACG
CATGATGAATTGATTGCAGCGGATGGGTTCTATGCTAACTTGTATAACAGTCAATTTGAATCGTTGACGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.75

99.144

0.543