Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KSF55_RS00245 Genome accession   NZ_CP077099
Coordinates   60006..61769 (+) Length   587 a.a.
NCBI ID   WP_252269325.1    Uniprot ID   -
Organism   Lactiplantibacillus pentosus strain 9D3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 55006..66769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSF55_RS00225 (KSF55_00225) - 56025..56516 (-) 492 WP_252269323.1 thioredoxin domain-containing protein -
  KSF55_RS00230 (KSF55_00230) - 56976..58394 (-) 1419 WP_225422362.1 MDR family MFS transporter -
  KSF55_RS00235 (KSF55_00235) - 58415..59038 (-) 624 WP_105960918.1 NAD(P)H-dependent oxidoreductase -
  KSF55_RS00240 (KSF55_00240) - 59243..59692 (+) 450 WP_105960919.1 MarR family winged helix-turn-helix transcriptional regulator -
  KSF55_RS00245 (KSF55_00245) rcrP 60006..61769 (+) 1764 WP_252269325.1 ABC transporter ATP-binding protein Regulator
  KSF55_RS00250 (KSF55_00250) rcrQ 61769..63523 (+) 1755 WP_105960921.1 ABC transporter ATP-binding protein Regulator
  KSF55_RS00255 (KSF55_00255) - 63702..64322 (+) 621 WP_252269327.1 hypothetical protein -
  KSF55_RS00260 (KSF55_00260) - 64510..65091 (+) 582 WP_162937103.1 uracil-DNA glycosylase family protein -
  KSF55_RS00265 (KSF55_00265) - 65211..65720 (+) 510 WP_252269329.1 plasmid pRiA4b ORF-3 family protein -
  KSF55_RS00270 (KSF55_00270) - 65860..66015 (+) 156 WP_162937058.1 hypothetical protein -
  KSF55_RS00275 (KSF55_00275) - 65984..66352 (+) 369 WP_252269332.1 6-carboxytetrahydropterin synthase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 63649.73 Da        Isoelectric Point: 6.6243

>NTDB_id=579275 KSF55_RS00245 WP_252269325.1 60006..61769(+) (rcrP) [Lactiplantibacillus pentosus strain 9D3]
MKKLLGRLNKKEWGLIGLSALLIIIQVGLELQIPSYMTQITTALEMKGTSTSDVLKPGGLMLMLSILSMLTSIVVGFIAA
KVAAGFAARLRASVFGQVMDYSNADIKQFSVPSLLTRSTNDITQIQQFVAMGMQVIIKAPITAIWAISKIANKGWQWTTA
TGVAVLVLVAMLTVILTLVQPRFKIVQGLTDRLNAVIRENLNGIRVVHAYNAEDYQNNKFQTANDNLTKTNLFANRVLAL
MNPGMSLISNGLTLAVYAIGAVLIQSAVMSSKLSLFSNMIVFSSYAMQVIMGFLLLSIIFVILPRVTVSISRINEVLDVA
PSIHYPSESVTPVTSQAVIEFRDVSFRFAATEANVINHLSFTVQPGQTLAIIGSTGSGKTTVLDLLARRYDVTEGEILVD
GVNVKAYPEAELNRKIGYVPQKAVLFSGTIRSNIDFGQTDEHAAALTDDEINEALAIAQASDFVDESIDGLDTPVAQHGD
NFSGGQKQRLAIARAVARKSAILMFDDSFSALDYATDQKLRHALREKASGTTKVIVAQRISTIMDADQIIVLDEGNVAGI
GTHQSLLADNQVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=579275 KSF55_RS00245 WP_252269325.1 60006..61769(+) (rcrP) [Lactiplantibacillus pentosus strain 9D3]
ATGAAAAAATTACTGGGACGATTGAATAAGAAAGAATGGGGATTAATTGGGCTCAGCGCACTTTTGATTATCATTCAGGT
TGGGTTAGAACTACAGATTCCTTCTTATATGACGCAAATTACGACGGCGCTTGAAATGAAAGGCACCAGCACTAGTGACG
TGCTGAAGCCTGGTGGATTGATGCTCATGCTGTCGATTCTCAGCATGTTGACGTCAATTGTTGTTGGTTTTATTGCGGCG
AAGGTTGCAGCCGGATTTGCAGCACGCTTGCGGGCTAGTGTCTTTGGTCAAGTTATGGATTACTCAAATGCTGATATTAA
ACAATTCTCAGTTCCTAGTCTGTTAACTCGGTCAACCAATGACATTACGCAGATTCAACAATTTGTCGCAATGGGGATGC
AAGTGATTATTAAAGCACCGATTACGGCAATTTGGGCGATTTCCAAGATTGCTAATAAAGGTTGGCAATGGACAACGGCT
ACAGGAGTTGCAGTGCTGGTCCTAGTGGCGATGCTGACCGTCATTTTGACCTTAGTACAGCCACGCTTCAAAATTGTGCA
AGGTCTGACTGATCGCTTGAACGCAGTCATCCGCGAGAATTTGAATGGGATTCGGGTAGTCCACGCTTATAACGCAGAAG
ATTATCAAAATAATAAGTTTCAAACAGCTAACGATAATTTAACGAAGACTAACTTGTTTGCGAACCGGGTCTTGGCACTG
ATGAATCCAGGAATGTCACTAATTTCAAATGGTTTGACGTTGGCCGTGTACGCAATTGGTGCAGTGTTGATTCAGTCGGC
GGTCATGAGCAGTAAATTATCGTTATTCTCAAATATGATCGTCTTTTCATCATATGCAATGCAAGTCATCATGGGATTCT
TGTTACTTTCGATTATCTTTGTGATTTTACCACGAGTCACGGTTTCAATTAGCCGAATTAATGAAGTTTTGGACGTTGCA
CCATCGATTCATTATCCATCGGAGTCGGTAACGCCAGTGACTAGTCAAGCGGTGATTGAATTTCGCGATGTCAGTTTCAG
ATTTGCAGCCACTGAGGCGAATGTCATCAATCATCTTAGCTTTACCGTGCAGCCAGGGCAAACGTTAGCGATTATTGGCT
CAACGGGTAGTGGTAAGACGACGGTCTTGGACTTACTAGCACGTCGGTACGATGTTACTGAAGGTGAAATTCTAGTTGAC
GGTGTCAATGTTAAAGCTTATCCGGAAGCAGAACTCAATCGCAAAATCGGCTATGTGCCACAAAAAGCGGTCCTATTCTC
CGGAACGATTCGCTCAAATATTGATTTTGGACAGACTGACGAGCATGCGGCAGCATTGACAGATGATGAAATCAATGAAG
CGTTAGCAATTGCACAAGCCAGTGATTTTGTTGATGAGAGTATTGATGGTTTGGATACACCGGTTGCACAACATGGTGAT
AACTTCTCTGGTGGTCAAAAGCAGCGGCTTGCAATCGCACGGGCAGTTGCGAGAAAGTCGGCCATTCTGATGTTCGACGA
TTCGTTTTCTGCACTGGATTATGCAACTGACCAAAAATTGCGACACGCCTTACGTGAAAAGGCTAGTGGAACGACAAAAG
TGATTGTGGCCCAACGCATTAGCACAATCATGGATGCAGATCAGATCATCGTGCTTGATGAAGGGAACGTTGCCGGAATT
GGGACGCATCAATCGCTACTAGCAGATAATCAAGTTTATCAAGAAATTGCATACTCACAACTGTCAAAGGAGGAATTAGC
GTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-508)

ABC transporter transmembrane region (ABC_membrane)

(18-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.351

100

0.564