Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MUA35_RS07600 Genome accession   NZ_CP094770
Coordinates   1564988..1566667 (-) Length   559 a.a.
NCBI ID   WP_000942210.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1559988..1571667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA35_RS07580 (MUA35_07555) - 1560138..1561412 (-) 1275 WP_262607512.1 dihydrolipoamide acetyltransferase family protein -
  MUA35_RS07585 (MUA35_07560) - 1561425..1562408 (-) 984 WP_001096637.1 alpha-ketoacid dehydrogenase subunit beta -
  MUA35_RS07590 (MUA35_07565) - 1562408..1563400 (-) 993 WP_262538687.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  MUA35_RS07595 (MUA35_07570) lpdA 1563416..1564837 (-) 1422 WP_262607513.1 dihydrolipoyl dehydrogenase -
  MUA35_RS07600 (MUA35_07575) recN 1564988..1566667 (-) 1680 WP_000942210.1 DNA repair protein RecN Machinery gene
  MUA35_RS07605 (MUA35_07580) ahrC 1566683..1567135 (-) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  MUA35_RS07610 (MUA35_07585) - 1567566..1568447 (-) 882 WP_072491755.1 polyprenyl synthetase family protein -
  MUA35_RS07615 (MUA35_07590) - 1568425..1568655 (-) 231 WP_262607514.1 exodeoxyribonuclease VII small subunit -
  MUA35_RS07620 (MUA35_07595) xseA 1568648..1569985 (-) 1338 WP_262538686.1 exodeoxyribonuclease VII large subunit -
  MUA35_RS07625 (MUA35_07600) nusB 1570002..1570391 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  MUA35_RS07630 (MUA35_07605) - 1570451..1570813 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64265.84 Da        Isoelectric Point: 4.7316

>NTDB_id=579152 MUA35_RS07600 WP_000942210.1 1564988..1566667(-) (recN) [Staphylococcus aureus strain IVB6201]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=579152 MUA35_RS07600 WP_000942210.1 1564988..1566667(-) (recN) [Staphylococcus aureus strain IVB6201]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGACGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAATCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTTCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGTATTCAAAACTCTGAAAAATTAAGTTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCTAAGCAGCGTCGTATAGTTG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATATCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGTGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44