Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MUA94_RS10010 Genome accession   NZ_CP094768
Coordinates   2007394..2008476 (-) Length   360 a.a.
NCBI ID   WP_262537172.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6202     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2002394..2013476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA94_RS09990 (MUA94_09970) - 2003009..2003107 (-) 99 Protein_1937 hypothetical protein -
  MUA94_RS09995 (MUA94_09975) secA 2003149..2005680 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  MUA94_RS10000 (MUA94_09980) hpf 2006094..2006666 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  MUA94_RS10005 (MUA94_09985) - 2006727..2007401 (-) 675 WP_262537171.1 ComF family protein -
  MUA94_RS10010 (MUA94_09990) comFA 2007394..2008476 (-) 1083 WP_262537172.1 DEAD/DEAH box helicase Machinery gene
  MUA94_RS10015 (MUA94_09995) fakB1 2008840..2009706 (-) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  MUA94_RS10020 (MUA94_10000) - 2009850..2010491 (+) 642 WP_262537174.1 YigZ family protein -
  MUA94_RS10025 (MUA94_10005) - 2010663..2011718 (-) 1056 WP_262537177.1 glycosyltransferase family 4 protein -
  MUA94_RS10030 (MUA94_10010) - 2012036..2013106 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41981.43 Da        Isoelectric Point: 9.5878

>NTDB_id=579092 MUA94_RS10010 WP_262537172.1 2007394..2008476(-) (comFA) [Staphylococcus aureus strain IVB6202]
MDNVTRYKITESSQSASQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPNENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIEKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=579092 MUA94_RS10010 WP_262537172.1 2007394..2008476(-) (comFA) [Staphylococcus aureus strain IVB6202]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTGCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCAACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACATTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTGAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369