Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MUA94_RS07130 Genome accession   NZ_CP094768
Coordinates   1435031..1437019 (-) Length   662 a.a.
NCBI ID   WP_000481451.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6202     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1430031..1442019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA94_RS07110 (MUA94_07100) sbcD 1432620..1433741 (-) 1122 WP_262536730.1 exonuclease subunit SbcD -
  MUA94_RS07115 (MUA94_07105) - 1433865..1434332 (-) 468 WP_165811113.1 CcdC family protein -
  MUA94_RS07120 (MUA94_07110) - 1434426..1434524 (-) 99 WP_001789897.1 hypothetical protein -
  MUA94_RS07125 (MUA94_07115) - 1434511..1434753 (-) 243 WP_000246909.1 YneF family protein -
  MUA94_RS07130 (MUA94_07120) recP/tkt 1435031..1437019 (-) 1989 WP_000481451.1 transketolase Machinery gene
  MUA94_RS07135 (MUA94_07125) - 1437140..1437379 (-) 240 WP_000071351.1 DUF896 domain-containing protein -
  MUA94_RS07140 (MUA94_07130) sosA 1437515..1437748 (-) 234 WP_000499651.1 DNA damage-induced cell division inhibitor SosA -
  MUA94_RS07145 (MUA94_07135) dinR/lexA 1437891..1438514 (+) 624 WP_001208755.1 transcriptional repressor LexA Regulator
  MUA94_RS07150 (MUA94_07140) - 1438894..1439910 (-) 1017 WP_180991598.1 CAP domain-containing protein -
  MUA94_RS07160 (MUA94_07150) guaC 1439932..1440909 (-) 978 WP_262536735.1 GMP reductase -
  MUA94_RS07165 (MUA94_07155) rpsN 1441066..1441335 (-) 270 WP_001085655.1 30S ribosomal protein S14 -
  MUA94_RS07170 (MUA94_07160) rpmG 1441789..1441938 (-) 150 WP_001265708.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72252.72 Da        Isoelectric Point: 4.6505

>NTDB_id=579065 MUA94_RS07130 WP_000481451.1 1435031..1437019(-) (recP/tkt) [Staphylococcus aureus strain IVB6202]
MFNEKDQLAVDTLRALSIDTIEKANSGHPGLPMGAAPMAYTLWTRHLNFNPQSKDYFNRDRFVLSAGHGSALLYSLLHVS
GSLELEELKQFRQWGSKTPGHPEYRHTDGVEVTTGPLGQGFAMSVGLALAEDHLAGKFNKEGYNVVDHYTYVLASDGDLM
EGISHEAASFAGHNKLSKLVVLYDSNDISLDGELNKAFSENTKARFEAYGWNYLLVKDGNDLEEIDNAITTAKSQEGPTI
IEVKTTIGFGSPNKAGTNGVHGAPLGEDERKLTFENYGLDPEKRFNVSEEVYEIFQNTMLKRANEDESQWNSLLEKYAET
YPELAEEFKLAISGKLPKNYKDELPRFELGHNGASRADSGTVIQAISKTVPSFFGGSADLAGSNKSNVNDATDYSSETPE
GKNVWFGVREFAMGAAVNGMAAHGGLHPYGATFFVFSDYLKPALRLSSIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAG
LRAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAYTVYGSEETPEFLLLASGSE
VSLAVEAAKDLEKQGKSVRVVSMPNWNAFEQQSEEYKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAP
GDLVVEKYGFTKENILNQVMSL

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=579065 MUA94_RS07130 WP_000481451.1 1435031..1437019(-) (recP/tkt) [Staphylococcus aureus strain IVB6202]
ATGTTTAATGAAAAAGATCAATTAGCTGTTGATACGCTACGTGCACTAAGTATCGACACAATCGAAAAAGCGAATTCTGG
TCATCCAGGATTACCTATGGGAGCTGCCCCAATGGCTTACACTTTGTGGACACGTCATCTGAATTTTAATCCACAATCTA
AAGATTACTTCAATAGAGACCGTTTCGTATTATCGGCAGGGCATGGTTCAGCATTATTGTATAGCTTGTTACATGTTTCT
GGTAGTTTAGAATTAGAAGAATTAAAGCAATTTAGACAATGGGGTTCTAAAACGCCAGGCCATCCTGAATACAGACATAC
TGATGGTGTAGAAGTTACTACTGGACCACTTGGACAAGGTTTTGCTATGTCAGTAGGATTAGCTTTAGCAGAAGATCACC
TAGCAGGGAAATTTAATAAAGAAGGATATAATGTTGTAGATCATTACACATATGTATTAGCTTCTGACGGTGATTTAATG
GAAGGTATTTCGCATGAAGCAGCTTCATTTGCTGGACATAATAAATTAAGTAAATTAGTTGTTTTATACGATTCAAATGA
TATTTCATTAGATGGCGAATTAAACAAAGCTTTTTCTGAAAACACAAAAGCTCGTTTTGAAGCATATGGTTGGAATTACT
TACTAGTTAAAGATGGTAATGATTTAGAAGAAATTGATAATGCGATTACTACTGCTAAATCTCAAGAAGGACCAACAATT
ATCGAAGTTAAAACAACAATCGGATTTGGTTCACCGAATAAAGCAGGAACTAATGGTGTTCATGGGGCACCTTTAGGTGA
AGATGAAAGAAAATTAACATTCGAAAATTACGGTTTAGATCCTGAAAAACGTTTTAATGTTTCAGAAGAAGTATACGAAA
TTTTCCAAAATACTATGTTAAAACGTGCTAATGAAGATGAATCTCAATGGAATTCATTATTAGAAAAATATGCAGAAACA
TATCCTGAATTAGCAGAAGAATTTAAATTAGCGATTAGTGGTAAATTGCCTAAAAATTATAAGGATGAACTGCCACGTTT
TGAACTTGGTCATAATGGTGCATCTCGTGCTGATTCTGGTACTGTTATTCAAGCAATCAGTAAAACTGTCCCTTCATTCT
TTGGTGGATCAGCAGACCTTGCTGGTTCAAACAAATCCAATGTAAATGATGCAACAGATTATAGTTCTGAAACACCTGAA
GGTAAAAATGTGTGGTTTGGTGTACGTGAATTTGCTATGGGTGCTGCTGTAAATGGTATGGCTGCACATGGAGGTTTACA
TCCATATGGTGCAACATTCTTCGTATTTAGTGATTATTTAAAACCAGCGTTACGCTTATCATCAATTATGGGATTAAATG
CTACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAACAATTAGCTGGA
CTAAGAGCCATTCCAAATATGAATGTTATTCGTCCTGCAGATGGTAATGAAACAAGAGTAGCATGGGAAGTTGCCTTAGA
ATCTGAATCTACACCTACTTCATTAGTATTGACACGTCAAAACTTACCGGTTTTAGATGTACCAGAAGATGTAGTTGAAG
AAGGCGTTCGAAAAGGTGCCTATACAGTTTATGGCTCTGAAGAGACACCAGAATTCCTATTATTAGCTTCAGGTTCAGAA
GTTAGTCTTGCAGTTGAAGCTGCTAAAGATCTTGAAAAGCAAGGTAAATCAGTGCGTGTTGTTTCAATGCCTAACTGGAA
TGCATTTGAACAACAATCTGAAGAATATAAAGAATCAGTTATTCCATCAAGCGTAACAAAACGTGTTGCGATTGAAATGG
CTTCACCGCTAGGATGGCATAAATATGTAGGTACTGCAGGTAAAGTTATTGCTATTGACGGCTTTGGCGCAAGTGCACCT
GGCGATTTAGTAGTTGAAAAATATGGCTTTACAAAAGAAAATATCTTAAACCAAGTTATGAGCTTATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-337)

Transketolase, C-terminal domain (Transketolase_C)

(548-655)

Transketolase, pyrimidine binding domain (Transket_pyr)

(359-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.105

100

0.554