Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HU754_RS25945 Genome accession   NZ_CP077090
Coordinates   5875233..5876600 (-) Length   455 a.a.
NCBI ID   WP_007909773.1    Uniprot ID   J2YZH4
Organism   Pseudomonas zeae strain OE 48.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5870233..5881600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU754_RS25920 (HU754_025920) - 5870365..5871075 (+) 711 WP_186623972.1 GntR family transcriptional regulator -
  HU754_RS25925 (HU754_025925) yjiA 5871174..5872145 (-) 972 WP_186623973.1 GTPase -
  HU754_RS25930 (HU754_025930) - 5872307..5872504 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  HU754_RS25935 (HU754_025935) - 5872520..5874586 (-) 2067 WP_093434763.1 carbon starvation CstA family protein -
  HU754_RS25940 (HU754_025940) - 5874746..5875114 (+) 369 WP_186623974.1 PilZ domain-containing protein -
  HU754_RS25945 (HU754_025945) radA 5875233..5876600 (-) 1368 WP_007909773.1 DNA repair protein RadA Machinery gene
  HU754_RS25950 (HU754_025950) - 5876646..5877191 (-) 546 WP_186623975.1 ankyrin repeat domain-containing protein -
  HU754_RS25955 (HU754_025955) katB 5877251..5878792 (-) 1542 WP_186623976.1 catalase KatB -
  HU754_RS25960 (HU754_025960) mscL 5879079..5879492 (+) 414 WP_093434751.1 large-conductance mechanosensitive channel protein MscL -
  HU754_RS25965 (HU754_025965) - 5879539..5880315 (-) 777 WP_186623977.1 ferredoxin--NADP reductase -
  HU754_RS25970 (HU754_025970) - 5880638..5881351 (+) 714 WP_186623979.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48773.25 Da        Isoelectric Point: 6.8987

>NTDB_id=579062 HU754_RS25945 WP_007909773.1 5875233..5876600(-) (radA) [Pseudomonas zeae strain OE 48.2]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=579062 HU754_RS25945 WP_007909773.1 5875233..5876600(-) (radA) [Pseudomonas zeae strain OE 48.2]
ATGGCCAAGGCCAAGCGCATGTACGGTTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCGGGCCAGTGCGGCGAGTG
CGGCGCCTGGAACACCCTGACCGAGACCATGATCGAAAGCGGCGGCGCCACGGCACCGACCGGCCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCATCGAAGAAATTCCGCGCTTTTCCACAGCGTCGGGTGAGCTG
GACCGGGTCCTCGGTGGCGGTCTGGTCGACGGCTCTGTGGTGCTGATCGGCGGTGATCCGGGTATCGGCAAATCGACCAT
TCTGTTGCAGACCTTGTGCAACCTGGCCAAAAGCATGCCGGCTCTCTACGTCACCGGCGAAGAATCCCAACAGCAAGTGG
CCATGCGTGCCCGGCGCCTCGGCTTACCGCAGGATCAACTGCGGGTAATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGTCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAGCTGCAATCGGCCCC
CGGCGGTGTTTCCCAGGTACGTGAGAGCGCGGCGCTGCTGGTGCGTTATGCAAAACAGAGCGGCACGGCGATTTTTCTCG
TCGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGTCCTCGCGTCTTGGAGCACATGGTAGACACTGTGCTGTATTTCGAA
GGCGAGTCCGATGGGCGTTTGCGTTTGCTGCGTGCGGTGAAAAACCGTTTCGGTGCGGTCAACGAACTCGGTGTGTTCGG
CATGACCGACAAGGGGTTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACTCGTGCGCAGGAAGAAGTCCCCGGCA
GCGTGGTCATGGCCACGTGGGAAGGCACGCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTTGATGACAGCCATCTGGCC
AATCCGCGTCGGGTGACGCTGGGGCTGGATCAAAACCGTTTGGCGATGTTGCTCGCAGTTTTGCATCGCCATGGCGGCAT
TCCGACCCATGATCAGGACGTGTTCCTTAACGTGGTCGGTGGGGTAAAGGTGTTGGAGACAGCATCGGATCTGGCGTTGA
TGGCGGCGGTCATGTCGAGCTTGCGCAACCGGCCGTTGCCGCATGATCTGCTGGTGTTCGGTGAGGTCGGGTTGTCGGGC
GAAGTGCGCCCGGTGCCGAGTGGACAGGAGCGTCTGAAGGAGGCGGCCAAGCATGGCTTCAAGCGGGCGATCGTGCCGAA
GGGCAATGCGCCGAAGGAATCGCCTCCGGGTTTGCAGATCATCGCCGTGACCCGCCTCGAACAGGCCCTCGACGCATTGT
TTGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2YZH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464
  radA Streptococcus pneumoniae Rx1

46.272

100

0.464
  radA Streptococcus pneumoniae D39

46.272

100

0.464
  radA Streptococcus pneumoniae R6

46.272

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.272

100

0.464