Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MUA94_RS06585 Genome accession   NZ_CP094768
Coordinates   1307425..1308051 (-) Length   208 a.a.
NCBI ID   WP_001108885.1    Uniprot ID   Q2YY57
Organism   Staphylococcus aureus strain IVB6202     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1302425..1313051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA94_RS06565 (MUA94_06555) - 1303047..1303733 (+) 687 WP_000362213.1 DnaD domain-containing protein -
  MUA94_RS06570 (MUA94_06560) nth 1303723..1304382 (+) 660 WP_000253765.1 endonuclease III -
  MUA94_RS06575 (MUA94_06565) - 1304387..1304728 (+) 342 WP_000182027.1 YpoC family protein -
  MUA94_RS06580 (MUA94_06570) - 1305245..1307428 (-) 2184 WP_262538724.1 transglycosylase domain-containing protein -
  MUA94_RS06585 (MUA94_06575) recU 1307425..1308051 (-) 627 WP_001108885.1 Holliday junction resolvase RecU Machinery gene
  MUA94_RS06590 (MUA94_06580) - 1308357..1308536 (+) 180 WP_115289500.1 hypothetical protein -
  MUA94_RS06595 (MUA94_06585) - 1308591..1308941 (+) 351 WP_001000802.1 YppE family protein -
  MUA94_RS06600 (MUA94_06590) - 1308934..1309497 (+) 564 WP_000241308.1 DUF1273 domain-containing protein -
  MUA94_RS06605 (MUA94_06595) gpsB 1309511..1309855 (+) 345 WP_001286320.1 cell division regulator GpsB -
  MUA94_RS06615 (MUA94_06605) - 1310505..1311650 (+) 1146 WP_000487150.1 class I SAM-dependent RNA methyltransferase -
  MUA94_RS06620 (MUA94_06610) - 1311734..1312066 (+) 333 WP_262538728.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24427.81 Da        Isoelectric Point: 9.7084

>NTDB_id=579062 MUA94_RS06585 WP_001108885.1 1307425..1308051(-) (recU) [Staphylococcus aureus strain IVB6202]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=579062 MUA94_RS06585 WP_001108885.1 1307425..1308051(-) (recU) [Staphylococcus aureus strain IVB6202]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAACAGCGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YY57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529