Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | HU754_RS25605 | Genome accession | NZ_CP077090 |
| Coordinates | 5807258..5808130 (+) | Length | 290 a.a. |
| NCBI ID | WP_093434872.1 | Uniprot ID | - |
| Organism | Pseudomonas zeae strain OE 48.2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5802258..5813130
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HU754_RS25580 (HU754_025580) | - | 5802460..5802756 (+) | 297 | WP_186625170.1 | DUF2845 domain-containing protein | - |
| HU754_RS25585 (HU754_025585) | - | 5803026..5803382 (-) | 357 | WP_077574577.1 | BON domain-containing protein | - |
| HU754_RS25590 (HU754_025590) | pilA | 5803678..5804109 (-) | 432 | WP_093434881.1 | pilin | Machinery gene |
| HU754_RS25595 (HU754_025595) | pilB | 5804336..5806036 (+) | 1701 | WP_093434878.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| HU754_RS25600 (HU754_025600) | pilC | 5806039..5807256 (+) | 1218 | WP_093434875.1 | type II secretion system F family protein | Machinery gene |
| HU754_RS25605 (HU754_025605) | pilD | 5807258..5808130 (+) | 873 | WP_093434872.1 | A24 family peptidase | Machinery gene |
| HU754_RS25610 (HU754_025610) | coaE | 5808127..5808750 (+) | 624 | WP_093434870.1 | dephospho-CoA kinase | - |
| HU754_RS25615 (HU754_025615) | yacG | 5808747..5808947 (+) | 201 | WP_186625120.1 | DNA gyrase inhibitor YacG | - |
| HU754_RS25620 (HU754_025620) | - | 5808954..5809169 (-) | 216 | WP_007909901.1 | hypothetical protein | - |
| HU754_RS25625 (HU754_025625) | - | 5809235..5809924 (-) | 690 | WP_186625111.1 | energy-coupling factor ABC transporter permease | - |
| HU754_RS25630 (HU754_025630) | - | 5809921..5810388 (-) | 468 | WP_186625103.1 | FAD/FMN-containing dehydrogenase | - |
| HU754_RS25635 (HU754_025635) | - | 5810519..5811145 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| HU754_RS25640 (HU754_025640) | - | 5811142..5811669 (+) | 528 | WP_095048688.1 | MOSC domain-containing protein | - |
| HU754_RS25645 (HU754_025645) | - | 5811721..5811894 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32239.53 Da Isoelectric Point: 7.7032
>NTDB_id=579059 HU754_RS25605 WP_093434872.1 5807258..5808130(+) (pilD) [Pseudomonas zeae strain OE 48.2]
MPIDELFAMYPLAFVGTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGEASQPIYNLMLPHSECPHCAHRIR
PWENVPLLSYLWLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVTLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITAFYWQFVGLK
MPIDELFAMYPLAFVGTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGEASQPIYNLMLPHSECPHCAHRIR
PWENVPLLSYLWLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVTLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITAFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=579059 HU754_RS25605 WP_093434872.1 5807258..5808130(+) (pilD) [Pseudomonas zeae strain OE 48.2]
ATGCCTATCGACGAACTGTTTGCCATGTATCCGCTAGCGTTTGTCGGCACCGCCCTGCTGCTGGGCCTGGTGGTCGGCAG
CTTCCTCAATGTGCTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGCCAGCAGGCACACGATGTGCTCGGTT
TGCCCGGCGAAGCCTCGCAACCCATCTACAACCTGATGCTGCCGCACTCCGAATGCCCGCATTGCGCCCACCGGATTCGC
CCGTGGGAGAACGTTCCCCTGCTCAGTTATCTATGGCTGCGCGGGCGCTGTTCAGCGTGCTCCGCTCCGATCAGCAAACG
TTATCCGTTGACCGAGCTGGCCTGTGGGCTGCTTTCGGCCTTCATCGCCTGGCACTTGGGTTTCGGTTGGCCGGCGTGCC
TGCTGATCGTCCTCACCTGGGGTCTGCTGGCGATGAGTCTGATCGACACCGAGCATCAACTATTGCCTGATGTGCTGGTG
TTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCCTGTTCGTGACCTTGCACGATGCGTTGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAACTGCTGACTGGCAAGGACGGCATCGGTCATGGTGATT
TCAAACTGTTGGCGCTGCTGGGGGCATGGGGCGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCACTGGTCGGC
GCCATTATCGGGGTGATTTTGTTGCGCCTGCGCGAGCAAAAAACCTCGACGCCAATCCCCTTCGGCCCTTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGCCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTGTTTGCCATGTATCCGCTAGCGTTTGTCGGCACCGCCCTGCTGCTGGGCCTGGTGGTCGGCAG
CTTCCTCAATGTGCTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGCCAGCAGGCACACGATGTGCTCGGTT
TGCCCGGCGAAGCCTCGCAACCCATCTACAACCTGATGCTGCCGCACTCCGAATGCCCGCATTGCGCCCACCGGATTCGC
CCGTGGGAGAACGTTCCCCTGCTCAGTTATCTATGGCTGCGCGGGCGCTGTTCAGCGTGCTCCGCTCCGATCAGCAAACG
TTATCCGTTGACCGAGCTGGCCTGTGGGCTGCTTTCGGCCTTCATCGCCTGGCACTTGGGTTTCGGTTGGCCGGCGTGCC
TGCTGATCGTCCTCACCTGGGGTCTGCTGGCGATGAGTCTGATCGACACCGAGCATCAACTATTGCCTGATGTGCTGGTG
TTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCCTGTTCGTGACCTTGCACGATGCGTTGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAACTGCTGACTGGCAAGGACGGCATCGGTCATGGTGATT
TCAAACTGTTGGCGCTGCTGGGGGCATGGGGCGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCACTGGTCGGC
GCCATTATCGGGGTGATTTTGTTGCGCCTGCGCGAGCAAAAAACCTCGACGCCAATCCCCTTCGGCCCTTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGCCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.448 |
100 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
51.773 |
97.241 |
0.503 |
| pilD | Acinetobacter baumannii D1279779 |
49.442 |
92.759 |
0.459 |
| pilD | Acinetobacter nosocomialis M2 |
49.442 |
92.759 |
0.459 |
| pilD | Neisseria gonorrhoeae MS11 |
47.037 |
93.103 |
0.438 |