Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HU749_RS25775 Genome accession   NZ_CP077086
Coordinates   5833670..5835037 (-) Length   455 a.a.
NCBI ID   WP_186651554.1    Uniprot ID   -
Organism   Pseudomonas ogarae strain SWRI108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5828670..5840037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU749_RS25750 (HU749_025750) - 5828720..5829406 (+) 687 WP_186652382.1 GntR family transcriptional regulator -
  HU749_RS25755 (HU749_025755) yjiA 5829545..5830513 (-) 969 WP_046065068.1 GTPase -
  HU749_RS25760 (HU749_025760) - 5830734..5830931 (-) 198 WP_003182142.1 YbdD/YjiX family protein -
  HU749_RS25765 (HU749_025765) - 5830947..5833013 (-) 2067 WP_217870557.1 carbon starvation CstA family protein -
  HU749_RS25770 (HU749_025770) - 5833172..5833528 (+) 357 WP_079302693.1 PilZ domain-containing protein -
  HU749_RS25775 (HU749_025775) radA 5833670..5835037 (-) 1368 WP_186651554.1 DNA repair protein RadA Machinery gene
  HU749_RS25780 (HU749_025780) - 5835235..5835783 (-) 549 WP_079303434.1 ankyrin repeat domain-containing protein -
  HU749_RS25785 (HU749_025785) katB 5835935..5837476 (-) 1542 WP_186651556.1 catalase KatB -
  HU749_RS25790 (HU749_025790) mscL 5837759..5838172 (+) 414 WP_014340304.1 large-conductance mechanosensitive channel protein MscL -
  HU749_RS25795 (HU749_025795) - 5838228..5839004 (-) 777 WP_186651558.1 ferredoxin--NADP reductase -
  HU749_RS25800 (HU749_025800) - 5839298..5840011 (+) 714 WP_046065179.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48763.22 Da        Isoelectric Point: 6.8987

>NTDB_id=578975 HU749_RS25775 WP_186651554.1 5833670..5835037(-) (radA) [Pseudomonas ogarae strain SWRI108]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLTETMVESGGAAAPTGRTGWAGQQTQIKTLAEVSVEEVPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=578975 HU749_RS25775 WP_186651554.1 5833670..5835037(-) (radA) [Pseudomonas ogarae strain SWRI108]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGCTCGACCTTTCCCAAATGGGCCGGCCAGTGCAGCGAATG
CGGGGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGGTGCAGCGGCGCCCACCGGTCGTACGGGTTGGGCCG
GTCAGCAGACGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAGTCCCGCGTTTTTCCACCGCATCCGGTGAACTG
GACCGCGTGCTGGGCGGTGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAATCCACCAT
CCTGCTGCAAACCTTGTGCAGCCTCGCCACCCGCATGCCGGCGCTGTATGTCACAGGTGAAGAATCCCAACAGCAGGTCG
CCATGCGCGCCCGGCGCCTGGGCTTGCCCCAGGACCAGTTGCGGGTCATGACTGAAACCTGCATCGAAACCATCATCGCC
ACGGCGCGCCTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACCATTTTCACTGAACAGCTGCAATCGGCCCC
GGGCGGCGTGTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTCACCAAGGAAGGCGCACTGGCGGGGCCGCGCGTGTTGGAGCACATGGTCGATACCGTGTTGTATTTCGAA
GGCGAATCCGATGGTCGCCTGCGTTTGCTGCGGGCGGTGAAGAACCGCTTTGGTGCCGTGAACGAACTGGGTGTGTTCGG
CATGACCGACAGAGGCTTGAAAGAAGTCTCAAACCCTTCGGCGATCTTTCTGACGCGTGCCCAGGAAGAAGTCCCCGGCA
GTGTGGTCATGGCGACGTGGGAAGGGACCCGGCCGATGTTGGTCGAGGTGCAAGCGCTGGTGGACGACAGCCATCTGGCG
AATCCGCGCCGGGTCACCCTGGGCCTGGATCAGAATCGGCTCGCCATGTTGCTGGCGGTGCTGCATCGACACGGTGGGAT
TCCGACTCACGACCAGGACGTGTTCCTCAACGTCGTGGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTCATGTCCAGCCTGCGCAACCGGCCGCTGCCCCACGACCTGTTGGTGTTCGGCGAAGTGGGGTTGTCGGGC
GAAGTGCGGCCGGTGCCCAGTGGGCAGGAGCGGCTCAAGGAAGCGGCCAAGCACGGTTTCAAACGCGCCATCGTGCCCAA
GGGTAACGCGCCGAAGGAAGCGCCGGCGGGGTTGCAGATCATAGCGGTGACGCGCCTGGAACAGGCGTTGGATGCGTTGT
TCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(79-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus mitis NCTC 12261

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468