Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HU759_RS26320 Genome accession   NZ_CP077082
Coordinates   5870763..5872130 (-) Length   455 a.a.
NCBI ID   WP_186617089.1    Uniprot ID   -
Organism   Pseudomonas sp. OE 28.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5865763..5877130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU759_RS26300 (HU759_026300) - 5867719..5868087 (+) 369 WP_017139304.1 PilZ domain-containing protein -
  HU759_RS26305 (HU759_026305) - 5868473..5868970 (+) 498 WP_017139305.1 hypothetical protein -
  HU759_RS26310 (HU759_026310) - 5869230..5869976 (+) 747 WP_017139306.1 sulfite exporter TauE/SafE family protein -
  HU759_RS26315 (HU759_026315) - 5870002..5870736 (-) 735 WP_186617087.1 hypothetical protein -
  HU759_RS26320 (HU759_026320) radA 5870763..5872130 (-) 1368 WP_186617089.1 DNA repair protein RadA Machinery gene
  HU759_RS26325 (HU759_026325) - 5872166..5872705 (-) 540 WP_017139309.1 ankyrin repeat domain-containing protein -
  HU759_RS26330 (HU759_026330) - 5872762..5874303 (-) 1542 WP_017139310.1 catalase -
  HU759_RS26335 (HU759_026335) mscL 5874591..5875007 (+) 417 WP_017139311.1 large-conductance mechanosensitive channel protein MscL -
  HU759_RS26340 (HU759_026340) - 5875053..5875829 (-) 777 WP_177033974.1 ferredoxin--NADP reductase -
  HU759_RS26345 (HU759_026345) - 5876262..5876972 (+) 711 WP_017139313.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48846.41 Da        Isoelectric Point: 7.1317

>NTDB_id=578872 HU759_RS26320 WP_186617089.1 5870763..5872130(-) (radA) [Pseudomonas sp. OE 28.3]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPNGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNMPKESPPGIKIIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=578872 HU759_RS26320 WP_186617089.1 5870763..5872130(-) (radA) [Pseudomonas sp. OE 28.3]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCACCGAGTG
CGGTGCATGGAACACCCTGACGGAAACCATGATCGAAAGCGGCGGCGCCGCAGCCCCCAACGGCCGCGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACGTTGGCTGAAGTCAGCGTCGAGGAAATCCCACGTTTCTCCACGGCGTCCGGCGAGCTG
GACCGCGTGCTCGGCGGCGGGCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAATCGACCAT
CCTGCTGCAAACCCTGTGCAGCATTGCCAGCCGCATGCCGGCGCTGTACGTCACGGGTGAGGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGTCGCCTGGGCTTGCCCCAGGATCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCCCGTATCGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAGCTGCAATCGGCGCC
CGGCGGCGTGTCCCAGGTGCGCGAAAGTGCGGCGCTGCTGGTGCGGTATGCCAAGCAGAGCGGTACGGCGATTTTTCTGG
TGGGCCACGTGACCAAAGAGGGCGCCTTGGCCGGGCCGCGAGTGCTTGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCCGATGGCCGTTTGCGTTTGCTGCGGGCGGTGAAGAACCGTTTCGGCGCGGTCAACGAATTGGGCGTGTTCGC
CATGACTGACCGAGGCTTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACCCGCGCCCAGGAAGAAGTGCCGGGAA
GTGTGGTGATGGCGACGTGGGAAGGTACCCGGCCAATGTTGGTGGAAGTGCAGGCGCTGGTGGATGACAGCCACTTGGCC
AACCCGCGCCGGGTCACGCTCGGCCTGGATCAGAACCGCCTGGCGATGTTGCTCGCTGTGCTGCACCGTCACGGCGGTAT
TCCCACCCATGACCAGGACGTATTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCGAGCCTGCGCAATCGCCCGCTGCCCCATGACTTGCTGGTATTCGGCGAAGTCGGCCTGTCGGGC
GAGGTACGCCCGGTGCCGAGCGGCCAGGAGCGTTTGAAGGAAGCGGCCAAGCACGGCTTCAAGCGCGCGATCGTACCCAA
GGGCAATATGCCGAAGGAATCGCCGCCGGGAATCAAGATTATTGGCGTTACGCGGCTGGAACAGGCGCTGGATGCACTGT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.781

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47