Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   MUA14_RS03780 Genome accession   NZ_CP094760
Coordinates   783335..785116 (+) Length   593 a.a.
NCBI ID   WP_252550210.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 778335..790116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA14_RS03770 (MUA14_03760) ltaS 779229..781169 (+) 1941 WP_000098285.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  MUA14_RS03775 (MUA14_03765) - 781440..783323 (+) 1884 WP_000525104.1 ABC-F family ATP-binding cassette domain-containing protein -
  MUA14_RS03780 (MUA14_03770) recQ 783335..785116 (+) 1782 WP_252550210.1 DNA helicase RecQ Machinery gene
  MUA14_RS03785 (MUA14_03775) - 785338..786315 (+) 978 WP_000589242.1 ABC transporter ATP-binding protein -
  MUA14_RS03790 (MUA14_03780) - 786308..787822 (+) 1515 WP_000180995.1 ABC transporter permease/substrate-binding protein -
  MUA14_RS03795 (MUA14_03785) hisC 788062..789120 (+) 1059 WP_252550212.1 histidinol-phosphate transaminase -
  MUA14_RS03800 (MUA14_03790) - 789471..790010 (+) 540 Protein_738 5'(3')-deoxyribonucleotidase -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68212.24 Da        Isoelectric Point: 6.9432

>NTDB_id=578765 MUA14_RS03780 WP_252550210.1 783335..785116(+) (recQ) [Staphylococcus aureus strain IVB6232]
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQ
AVFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFT
LPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVE
ELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRD
GLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDK
SYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNEKDEI
LMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPAS
KQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=578765 MUA14_RS03780 WP_252550210.1 783335..785116(+) (recQ) [Staphylococcus aureus strain IVB6232]
ATGATGCAACAAACATTATCGCATTACTTTGGGTATGAAACGTTTCGACCAGGACAAGAAGAAATTATTAGCAAAGTATT
AGACCATCGTAATGTGCTTGGTGTCTTACCAACTGGTGGAGGTAAGTCTATATGCTATCAAGTACCAGGTTTATTGTTAG
GTGGTACAACAATTGTAATAAGTCCACTAATATCATTAATGAAAGATCAAGTGGATCAATTAAAAGCGATGGGAATTCAG
GCTGTTTTTTTAAATAGTAGTTTGACTCAAAAAGAGCAACAACGTATTGAAAAAGCATTATCAAATGGAGAAATTCAATT
TTTGTATGTTGCACCAGAACGATTTGAAAACAGATATTTTTTAAATATGCTTCAGCGTATAAAGATTCACTTAGTCGCGT
TTGATGAAGCGCATTGTATATCTAAATGGGGGCATGATTTCAGACCGAGTTATCAAAACGTCATTTCTAAAGTATTTACG
TTACCTCAAGATTTTACAATAATAGCGTTGACAGCAACTGCCACGGTTGAAGTACAGCAAGATATTAGAGAAAAGTTAAA
TATCGCTCAAACTGATCAAATTAAAACGAGTACTAAGCGTAGAAACTTAATTTTTAAAGTAAATCCTACTTATCAACGTC
AAAAATTTATATTGGATTATATTAAAACACACGATGAAGATGCAGGTATTATTTATTGTTCTACACGTAAGCAAGTTGAA
GAGCTTCAAGAAGCCTTAGAAAGCCAGAAAATTGAAAGTGTTATATATCATGCAGGTTTGAGCAATAAAGAAAGAGAAGA
AGCGCAGAATGATTTCTTATTTGATCGTGTTAAAGTAGTCGTTGCTACAAATGCTTTTGGTATGGGTATTGATAAATCCA
ATGTACGTTTTGTTATTCATTATAATATGCCTGGAGATTTAGAATCTTATTATCAAGAAGCGGGTCGTGCAGGTCGTGAT
GGGTTGAAAAGTGAATGTATTTTGTTATTTAGCGAACGCGATATCAATTTACACGAGTATTTTATAACAGTCTCTCAAGC
TGATGATGACTATAAAGATAAAATGGGCGAAAAGTTAACTAAAATGATTCAATATACAAAAACAAAAAAATGTTTAGAAG
CAACAATTGTCCATTATTTTGAACCGAATGAAAAATTAGAAGAATGTGAACAATGTAGTAATTGTGTTCAACAAGATAAA
TCATATAATATGACACAAGAAGCTAAGATGATTATTAGTTGCATCGCTCGTATGAAACAACAAGAGAGTTATAGTGTTAT
CATTCAAGTGCTAAGAGGAGAGTCAACAGATTATATTAAGTATAAAGGTTATGATCAAATTTCAACCCATGGTTTAATGA
AAGGTTACACAACATCAGAATTAAGTCACTTAATAGATGAATTAAGATTCAAAGGGTTCTTAAATGAAAAAGATGAAATA
TTAATGTGTGATACTTCAATTAAAAAATTACTCAGTAATGAAGTAGAAGTATTCACAACACCATTTAAGCAAAAAGCGAC
TGAAAAAGTATTTATAAATACGGTTGAAGGGGTTGACCGAGTATTATTCAGTCAGTTGGTAGAAGTTCGTAAAAAGTTAA
GTGACAAATTAACGATAGCACCTGTAAGTATATTTTCTGATTACACGTTGGAGGAATTTGCTAAACGTAAGCCTGCTTCG
AAACAAGATATGATTAATATTGATGGCGTAGGTAGTTACAAATTAAAACATTATTGTCCAGCATTTTTAGAAACGATTCA
AAATTATAAAGCCAAAGTATAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(17-178)

Helicase conserved C-terminal domain (Helicase_C)

(217-320)

RQC domain (RQC)

(400-500)

HRDC domain (HRDC)

(521-586)

RecQ zinc-binding (RecQ_Zn_bind)

(333-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

42.373

99.494

0.422