Detailed information NTG0578652

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: KSS95_RS24155
• Genome accession: NZ_CP077073
• Coordinates: 5444828..5446195 (-)
• Length: 455 a.a.
• NCBI ID: WP_217850366.1
• Uniprot ID: -
• Organism: Pseudomonas muyukensis strain COW39
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5439828..5451195

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSS95_RS24140 (KSS95_24140)	-	5440321..5442987 (-)	2667	WP_225935599.1	TonB-dependent receptor	-
KSS95_RS24145 (KSS95_24145)	-	5443194..5444183 (-)	990	WP_217850363.1	FecR domain-containing protein	-
KSS95_RS24150 (KSS95_24150)	-	5444252..5444755 (-)	504	WP_217850365.1	RNA polymerase sigma factor	-
KSS95_RS24155 (KSS95_24155)	radA	5444828..5446195 (-)	1368	WP_217850366.1	DNA repair protein RadA	Machinery gene
KSS95_RS24160 (KSS95_24160)	mscL	5446374..5446787 (+)	414	WP_217850368.1	large-conductance mechanosensitive channel protein MscL	-
KSS95_RS24165 (KSS95_24165)	fur	5446860..5447264 (-)	405	WP_134692394.1	ferric iron uptake transcriptional regulator	-
KSS95_RS24170 (KSS95_24170)	-	5447362..5447877 (+)	516	WP_134692392.1	outer membrane protein assembly factor BamE	-
KSS95_RS24175 (KSS95_24175)	-	5447937..5448245 (-)	309	WP_217850370.1	RnfH family protein	-
KSS95_RS24180 (KSS95_24180)	-	5448238..5448672 (-)	435	WP_134692388.1	type II toxin-antitoxin system RatA family toxin	-
KSS95_RS24185 (KSS95_24185)	smpB	5448835..5449317 (+)	483	WP_011532120.1	SsrA-binding protein SmpB	-
KSS95_RS24190 (KSS95_24190)	-	5450394..5451161 (-)	768	WP_217850372.1	FCD domain-containing protein	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 48779.19 Da
• Isoelectric Point: 6.9556

>NTDB_id=578652 KSS95_RS24155 WP_217850366.1 5444828..5446195(-) (radA) [Pseudomonas muyukensis strain COW39]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVHMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPAGLQVIAVTRLEQALDALFE

Nucleotide

• Length: 1368 bp

>NTDB_id=578652 KSS95_RS24155 WP_217850366.1 5444828..5446195(-) (radA) [Pseudomonas muyukensis strain COW39]
ATGGCCAAGGCCAAGCGTTTGTATGGCTGCACCGAGTGTGGCGCGACCTTCCCCAAATGGGCTGGCCAGTGCGGCGAGTG
CGGGGCCTGGAACACCCTGGTCGAGACCATGATCGAAAGCGGCGGCGCCGCGGCGCCCAGCGGGCGGGCCGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAGGAGATCCCGCGCTTCACCACCAGCAGCACCGAGCTC
GACCGCGTGCTCGGCGGCGGCCTGGTGGATGGCTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCAT
CCTGCTGCAGACCCTGTGCAACATCGCCGTGCACATGCCGGCGCTGTACGTCACCGGCGAGGAATCGCAGCAGCAGGTGG
CCATGCGCTCGCGCCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTCATGACCGAAACCTGCATCGAGACCATCATCGCC
ACCGCCCGCCAGGAAAAACCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAATCGGCGCC
GGGCGGGGTGGCCCAGGTGCGCGAGAGCACCGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACAGCGATCTTCCTGG
TCGGCCATGTCACCAAGGAAGGCTCGCTGGCCGGCCCGCGGGTGCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGTGAGTCCGATGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGACCGTGGCCTGAAGGAGGTTTCCAACCCCTCGGCGATCTTCCTCAACCGCACCCAGGAAGAAGTGCCCGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACGACAGCCACCTGGCC
AACCCGCGACGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGTTGCTGGCGGTGCTGCACCGCCACGGCGGCAT
CCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCCTCAGACCTGGCGCTGC
TGGCGGCGGTGATGTCGAGCCTGCGCAACCGCCCGCTGGCCCATGGCCTGCTGGTGTTCGGCGAGATCGGCCTGTCGGGC
GAGGTACGCCCGGTGCCCAGCGGCCAGGAGCGGCTGAAGGAGGCTGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCGCCCAAGGAGTCGCCCGCCGGCTTGCAGGTGATCGCCGTGACCCGCCTGGAGCAGGCGCTGGATGCCTTGT
TCGAATAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (354-429)

• AAA domain (AAA_25) (72-221)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.684	100	0.488
radA	Streptococcus pneumoniae Rx1	46.154	100	0.462
radA	Streptococcus pneumoniae D39	46.154	100	0.462
radA	Streptococcus pneumoniae R6	46.154	100	0.462
radA	Streptococcus pneumoniae TIGR4	46.154	100	0.462
radA	Streptococcus mitis SK321	46.154	100	0.462
radA	Streptococcus mitis NCTC 12261	45.934	100	0.459