Detailed information NTG0578589

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J3992_RS11330
• Genome accession: NZ_CP077060
• Coordinates: 2516112..2517119 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain MS84A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2511112..2522119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J3992_RS11320 (J3992_11310)	cysM	2512276..2513163 (+)	888	WP_001279365.1	cysteine synthase CysM	-
J3992_RS11325 (J3992_11315)	mutS	2513431..2516019 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
J3992_RS11330 (J3992_11320)	rpoS	2516112..2517119 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
J3992_RS11335 (J3992_11325)	nlpD	2517193..2518128 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
J3992_RS11340 (J3992_11330)	-	2518128..2518754 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J3992_RS11345 (J3992_11335)	surE	2518747..2519499 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
J3992_RS11350 (J3992_11340)	truD	2519501..2520586 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
J3992_RS11355 (J3992_11345)	ispF	2520616..2521092 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J3992_RS11360 (J3992_11350)	ispD	2521089..2521787 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J3992_RS11365 (J3992_11355)	ftsB	2521784..2522068 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=578589 J3992_RS11330 WP_000116737.1 2516112..2517119(-) (rpoS) [Vibrio cholerae strain MS84A]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=578589 J3992_RS11330 WP_000116737.1 2516112..2517119(-) (rpoS) [Vibrio cholerae strain MS84A]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1