Detailed information NTG0578560

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: J3992_RS01110
• Genome accession: NZ_CP077060
• Coordinates: 237352..238359 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain MS84A
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 232352..243359

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J3992_RS01090 (J3992_01090)	metJ	232356..232673 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
J3992_RS01095 (J3992_01095)	-	232784..234061 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
J3992_RS01100 (J3992_01100)	rpmE	234369..234587 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
J3992_RS01105 (J3992_01105)	priA	234842..237046 (+)	2205	WP_001247858.1	primosomal protein N'	-
J3992_RS01110 (J3992_01110)	cytR	237352..238359 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
J3992_RS01115 (J3992_01115)	-	238531..239082 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
J3992_RS01120 (J3992_01120)	hslV	239219..239776 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
J3992_RS01125 (J3992_01125)	hslU	239842..241173 (+)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
J3992_RS01130 (J3992_01130)	-	241277..242194 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
J3992_RS01135 (J3992_01135)	rraA	242269..242784 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=578560 J3992_RS01110 WP_000224452.1 237352..238359(+) (cytR) [Vibrio cholerae strain MS84A]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=578560 J3992_RS01110 WP_000224452.1 237352..238359(+) (cytR) [Vibrio cholerae strain MS84A]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904