Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KRP25_RS10240 Genome accession   NZ_CP076863
Coordinates   2071524..2072120 (-) Length   198 a.a.
NCBI ID   WP_217048699.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain V3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2066524..2077120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRP25_RS10225 (KRP25_10225) helD 2066732..2068786 (-) 2055 WP_217048698.1 DNA helicase IV -
  KRP25_RS10230 (KRP25_10230) - 2068911..2069357 (+) 447 WP_002898425.1 YccF domain-containing protein -
  KRP25_RS10235 (KRP25_10235) yccS 2069375..2071510 (+) 2136 Protein_2025 YccS family putative transporter -
  KRP25_RS10240 (KRP25_10240) sxy/tfoX 2071524..2072120 (-) 597 WP_217048699.1 TfoX/Sxy family DNA transformation protein Regulator
  KRP25_RS10245 (KRP25_10245) sulA 2072469..2072978 (+) 510 WP_156651432.1 SOS-induced cell division inhibitor SulA -
  KRP25_RS10250 (KRP25_10250) ompA 2073331..2074401 (+) 1071 WP_217048700.1 porin OmpA -
  KRP25_RS10255 (KRP25_10255) matP 2074533..2074985 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  KRP25_RS10260 (KRP25_10260) - 2075171..2076928 (+) 1758 WP_217048701.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22542.15 Da        Isoelectric Point: 10.0350

>NTDB_id=578539 KRP25_RS10240 WP_217048699.1 2071524..2072120(-) (sxy/tfoX) [Klebsiella pneumoniae strain V3]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSPAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHVRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=578539 KRP25_RS10240 WP_217048699.1 2071524..2072120(-) (sxy/tfoX) [Klebsiella pneumoniae strain V3]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCCGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGTCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.254

99.495

0.5