Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MUA07_RS07805 Genome accession   NZ_CP094750
Coordinates   1618960..1620639 (-) Length   559 a.a.
NCBI ID   WP_000942208.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6248     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1613960..1625639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA07_RS07785 (MUA07_07785) - 1614110..1615384 (-) 1275 WP_000406850.1 dihydrolipoamide acetyltransferase family protein -
  MUA07_RS07790 (MUA07_07790) - 1615397..1616380 (-) 984 WP_001096637.1 alpha-ketoacid dehydrogenase subunit beta -
  MUA07_RS07795 (MUA07_07795) - 1616380..1617372 (-) 993 WP_000568357.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  MUA07_RS07800 (MUA07_07800) lpdA 1617388..1618809 (-) 1422 WP_252550410.1 dihydrolipoyl dehydrogenase -
  MUA07_RS07805 (MUA07_07805) recN 1618960..1620639 (-) 1680 WP_000942208.1 DNA repair protein RecN Machinery gene
  MUA07_RS07810 (MUA07_07810) ahrC 1620655..1621107 (-) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  MUA07_RS07815 (MUA07_07815) - 1621538..1622419 (-) 882 WP_252550413.1 polyprenyl synthetase family protein -
  MUA07_RS07820 (MUA07_07820) - 1622397..1622627 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  MUA07_RS07825 (MUA07_07825) xseA 1622620..1623957 (-) 1338 WP_001286930.1 exodeoxyribonuclease VII large subunit -
  MUA07_RS07830 (MUA07_07830) nusB 1623974..1624363 (-) 390 WP_252550416.1 transcription antitermination factor NusB -
  MUA07_RS07835 (MUA07_07835) - 1624423..1624785 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64246.80 Da        Isoelectric Point: 4.7311

>NTDB_id=578536 MUA07_RS07805 WP_000942208.1 1618960..1620639(-) (recN) [Staphylococcus aureus strain IVB6248]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRHR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=578536 MUA07_RS07805 WP_000942208.1 1618960..1620639(-) (recN) [Staphylococcus aureus strain IVB6248]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAATCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTTCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGTATTCAAAACTCTGAAAAATTAAGTTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAGCGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCTAAGCAGCGTCGTATAGTTG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGTGAAAATGCAAGAGAAATGATACAACACAATCAAAGACATAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44