Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MUA07_RS07130 Genome accession   NZ_CP094750
Coordinates   1502382..1503008 (+) Length   208 a.a.
NCBI ID   WP_001108892.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6248     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1497382..1508008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA07_RS07095 (MUA07_07095) - 1498366..1498698 (-) 333 WP_000516800.1 DUF4889 domain-containing protein -
  MUA07_RS07100 (MUA07_07100) - 1498781..1499926 (-) 1146 WP_000487150.1 class I SAM-dependent RNA methyltransferase -
  MUA07_RS07110 (MUA07_07110) gpsB 1500578..1500922 (-) 345 WP_001286320.1 cell division regulator GpsB -
  MUA07_RS07115 (MUA07_07115) - 1500936..1501499 (-) 564 WP_000241308.1 DUF1273 domain-containing protein -
  MUA07_RS07120 (MUA07_07120) - 1501492..1501842 (-) 351 WP_001000802.1 YppE family protein -
  MUA07_RS07125 (MUA07_07125) - 1501897..1502076 (-) 180 WP_001788819.1 hypothetical protein -
  MUA07_RS07130 (MUA07_07130) recU 1502382..1503008 (+) 627 WP_001108892.1 Holliday junction resolvase RecU Machinery gene
  MUA07_RS07135 (MUA07_07135) - 1503005..1505188 (+) 2184 WP_000138347.1 transglycosylase domain-containing protein -
  MUA07_RS07140 (MUA07_07140) - 1505706..1506047 (-) 342 WP_000182027.1 YpoC family protein -
  MUA07_RS07145 (MUA07_07145) nth 1506052..1506711 (-) 660 WP_000253765.1 endonuclease III -
  MUA07_RS07150 (MUA07_07150) - 1506701..1507387 (-) 687 WP_252550357.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24427.81 Da        Isoelectric Point: 9.7084

>NTDB_id=578533 MUA07_RS07130 WP_001108892.1 1502382..1503008(+) (recU) [Staphylococcus aureus strain IVB6248]
MNYPNGKPYRKNSALDGGKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=578533 MUA07_RS07130 WP_001108892.1 1502382..1503008(+) (recU) [Staphylococcus aureus strain IVB6248]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTTTAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529