Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MUA07_RS06590 Genome accession   NZ_CP094750
Coordinates   1355970..1357958 (+) Length   662 a.a.
NCBI ID   WP_000481449.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6248     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1350970..1362958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA07_RS06550 (MUA07_06550) rpmG 1351051..1351200 (+) 150 WP_001265708.1 50S ribosomal protein L33 -
  MUA07_RS06555 (MUA07_06555) rpsN 1351654..1351923 (+) 270 WP_001085655.1 30S ribosomal protein S14 -
  MUA07_RS06560 (MUA07_06560) guaC 1352080..1353057 (+) 978 WP_000688131.1 GMP reductase -
  MUA07_RS06570 (MUA07_06570) - 1353079..1354095 (+) 1017 WP_014532626.1 CAP domain-containing protein -
  MUA07_RS06575 (MUA07_06575) dinR/lexA 1354475..1355098 (-) 624 WP_001208755.1 transcriptional repressor LexA Regulator
  MUA07_RS06580 (MUA07_06580) sosA 1355241..1355474 (+) 234 WP_000499651.1 DNA damage-induced cell division inhibitor SosA -
  MUA07_RS06585 (MUA07_06585) - 1355610..1355849 (+) 240 WP_262542355.1 DUF896 domain-containing protein -
  MUA07_RS06590 (MUA07_06590) recP/tkt 1355970..1357958 (+) 1989 WP_000481449.1 transketolase Machinery gene
  MUA07_RS06595 (MUA07_06595) - 1358236..1358478 (+) 243 WP_000246909.1 YneF family protein -
  MUA07_RS06600 (MUA07_06600) - 1358465..1358563 (+) 99 WP_001789897.1 hypothetical protein -
  MUA07_RS06605 (MUA07_06605) - 1358657..1359124 (+) 468 WP_000966142.1 CcdC family protein -
  MUA07_RS06610 (MUA07_06610) sbcD 1359248..1360369 (+) 1122 WP_000691294.1 exonuclease subunit SbcD -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72252.77 Da        Isoelectric Point: 4.6804

>NTDB_id=578530 MUA07_RS06590 WP_000481449.1 1355970..1357958(+) (recP/tkt) [Staphylococcus aureus strain IVB6248]
MFNEKDQLAVDTLRALSIDTIEKANSGHPGLPMGAAPMAYTLWTRHLNFNPQSKDYFNRDRFVLSAGHGSALLYSLLHVS
GSLELEELKQFRQWGSKTPGHPEYRHTDGVEVTTGPLGQGFAMSVGLALAEDHLAGKFNKEGYNVVDHYTYVLASDGDLM
EGISHEAASFAGHNKLSKLVVLYDSNDISLDGELNKAFSENTKARFEAYGWNYLLVKDGNDLEEIDNAITTAKSQEGPTI
IEVKTTIGFGSPNKAGTNGVHGAPLGEDERKLTFENYGLDPEKRFNVSEEVYEIFQNTMLKRANEDESQWNSLLEKYAET
YPELAEEFKLAISGKLPKNYKDELPRFELGHNGASRADSGTVIQAISKTVPSFFGGSADLAGSNKSNVNDATDYSSETPE
GKNVWFGVREFAMGAAVNGMAAHGGLHPYGATFFVFSDYLKPALRLSSIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAG
LRAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAYTVYGSEETPEFLLLASGSE
VSLAVEAAKDLEKQGKSVRVVSMPNWNAFEKQSEEYKESVIPSSVTKRVAIEMASPLGWHKYVGTAGKVIAIDGFGASAP
GDLVVEKYGFTKENILNQVMSL

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=578530 MUA07_RS06590 WP_000481449.1 1355970..1357958(+) (recP/tkt) [Staphylococcus aureus strain IVB6248]
ATGTTTAATGAAAAAGATCAATTAGCTGTTGATACGCTACGTGCACTAAGTATCGACACAATCGAAAAAGCGAATTCTGG
TCATCCAGGATTACCTATGGGAGCTGCCCCAATGGCTTACACTTTGTGGACACGTCATCTGAATTTTAATCCACAATCTA
AAGATTACTTCAATAGAGACCGTTTCGTATTATCGGCAGGGCATGGTTCAGCATTATTGTATAGCTTGTTACATGTTTCT
GGTAGTTTAGAATTAGAAGAATTAAAGCAATTTAGACAATGGGGTTCTAAAACACCAGGCCATCCTGAATACAGACATAC
TGATGGTGTAGAAGTTACTACTGGACCACTTGGACAAGGTTTTGCTATGTCAGTAGGATTAGCTTTAGCAGAAGATCACC
TAGCAGGGAAATTTAATAAAGAAGGATATAATGTTGTAGATCATTACACATATGTATTAGCTTCTGACGGTGATTTAATG
GAAGGTATTTCGCATGAAGCAGCTTCATTTGCTGGACATAATAAATTAAGTAAATTAGTTGTTTTATACGATTCAAATGA
TATTTCATTAGATGGCGAATTAAACAAAGCTTTTTCTGAAAACACAAAAGCTCGTTTTGAAGCATATGGTTGGAATTACT
TACTAGTTAAAGATGGTAATGATTTAGAAGAAATTGATAATGCGATTACTACTGCTAAATCTCAAGAAGGACCAACAATT
ATCGAAGTTAAAACAACAATCGGATTTGGTTCACCGAATAAAGCAGGAACTAATGGTGTTCATGGGGCACCTTTAGGTGA
AGATGAAAGAAAATTAACATTCGAAAATTACGGTTTAGATCCTGAAAAACGTTTTAATGTTTCAGAAGAAGTATACGAAA
TTTTCCAAAATACTATGTTAAAACGTGCTAATGAAGATGAATCTCAATGGAATTCATTATTAGAAAAATATGCAGAAACA
TATCCTGAATTAGCAGAAGAATTTAAATTAGCGATTAGTGGTAAATTGCCTAAAAATTATAAGGATGAACTACCACGTTT
TGAACTTGGTCATAATGGTGCATCTCGTGCTGATTCTGGTACTGTTATTCAAGCAATCAGTAAAACTGTCCCTTCATTCT
TTGGTGGATCAGCAGACCTTGCTGGTTCAAACAAATCCAATGTAAATGATGCAACAGATTATAGTTCTGAAACACCTGAA
GGTAAAAATGTGTGGTTTGGTGTACGTGAATTTGCTATGGGTGCTGCTGTAAATGGTATGGCTGCACATGGAGGTTTACA
TCCATATGGTGCAACATTCTTCGTATTTAGTGATTATTTAAAACCAGCGTTACGCTTATCATCAATTATGGGATTAAATG
CTACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAACAATTAGCTGGA
CTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCAGATGGTAATGAAACAAGAGTAGCATGGGAAGTTGCCTTAGA
ATCTGAATCTACACCTACTTCATTAGTATTGACACGTCAAAACTTACCGGTTTTAGATGTACCAGAAGATGTAGTTGAAG
AAGGCGTTCGAAAAGGTGCCTATACAGTTTATGGCTCTGAAGAGACACCAGAATTCCTATTATTAGCTTCAGGTTCAGAA
GTTAGTCTTGCAGTTGAAGCTGCTAAAGATCTTGAAAAGCAAGGTAAATCAGTGCGTGTTGTTTCAATGCCTAACTGGAA
TGCATTTGAAAAACAATCTGAAGAATATAAAGAATCAGTTATTCCATCAAGCGTAACAAAACGTGTTGCGATTGAAATGG
CTTCACCGCTAGGATGGCATAAATATGTAGGTACTGCAGGTAAAGTTATTGCTATTGACGGCTTTGGCGCAAGTGCACCT
GGCGATTTAGTAGTTGAAAAATATGGCTTTACAAAAGAAAATATCTTAAACCAAGTTATGAGCTTATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-337)

Transketolase, pyrimidine binding domain (Transket_pyr)

(359-523)

Transketolase, C-terminal domain (Transketolase_C)

(548-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.105

100

0.554