Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KQ929_RS13145 Genome accession   NZ_CP076838
Coordinates   2645273..2645878 (-) Length   201 a.a.
NCBI ID   WP_207293416.1    Uniprot ID   -
Organism   Leclercia pneumoniae strain 49125     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2640273..2650878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ929_RS13130 (KQ929_13130) helD 2640493..2642547 (-) 2055 WP_207293418.1 DNA helicase IV -
  KQ929_RS13135 (KQ929_13135) - 2642670..2643119 (+) 450 WP_040076281.1 YccF domain-containing protein -
  KQ929_RS13140 (KQ929_13140) yccS 2643135..2645270 (+) 2136 WP_207293417.1 YccS family putative transporter -
  KQ929_RS13145 (KQ929_13145) sxy/tfoX 2645273..2645878 (-) 606 WP_207293416.1 TfoX/Sxy family DNA transformation protein Regulator
  KQ929_RS13150 (KQ929_13150) sulA 2646095..2646604 (+) 510 WP_046886668.1 SOS-induced cell division inhibitor SulA -
  KQ929_RS13155 (KQ929_13155) ompA 2646961..2648016 (+) 1056 WP_207293415.1 porin OmpA -
  KQ929_RS13160 (KQ929_13160) matP 2648080..2648532 (-) 453 WP_040076287.1 macrodomain Ter protein MatP -
  KQ929_RS13165 (KQ929_13165) - 2648718..2650478 (+) 1761 WP_207293414.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23277.00 Da        Isoelectric Point: 9.2610

>NTDB_id=578422 KQ929_RS13145 WP_207293416.1 2645273..2645878(-) (sxy/tfoX) [Leclercia pneumoniae strain 49125]
MKKISYERIYQSEKYLSSLGEVEHRALFGGYALAVDNTVFAMVSAGELYLRACEESASYFVKQGASFLTLLKRGRPVLLN
YYRVDETLWQDQERLLRLSSFALEAARRERCKRFKQDRLKDLPNLTFQLELLLCEAGIPNEEALRTLGAEACWLRIKRLN
KHLSYKVLFALEGAIQGLHEAALPAIRRRELIEWYKTLPAQ

Nucleotide


Download         Length: 606 bp        

>NTDB_id=578422 KQ929_RS13145 WP_207293416.1 2645273..2645878(-) (sxy/tfoX) [Leclercia pneumoniae strain 49125]
ATGAAAAAGATATCCTATGAACGGATCTATCAATCTGAAAAATACCTGTCCTCATTGGGAGAAGTAGAGCATCGCGCGTT
GTTTGGCGGGTACGCACTGGCCGTAGACAATACGGTGTTCGCCATGGTTTCAGCAGGCGAGTTGTACCTGCGGGCCTGCG
AAGAAAGCGCCTCCTATTTTGTCAAACAGGGCGCCTCATTCTTAACGCTGTTAAAACGTGGGCGGCCCGTCTTACTAAAC
TATTATCGGGTGGATGAGACCCTCTGGCAGGATCAAGAGCGACTGCTACGGCTCTCGTCGTTTGCGCTCGAAGCCGCCCG
CCGGGAACGCTGTAAACGCTTTAAACAGGACCGCCTGAAAGATCTCCCCAACCTGACCTTCCAACTCGAACTGCTTCTAT
GCGAAGCCGGAATTCCAAACGAAGAGGCGTTACGCACACTCGGCGCTGAGGCATGCTGGTTGAGGATCAAGCGGTTGAAT
AAGCATCTTAGTTACAAAGTGCTGTTTGCACTGGAAGGGGCGATCCAGGGGCTACATGAAGCGGCTCTCCCGGCAATACG
ACGCCGGGAGCTGATTGAGTGGTATAAAACATTGCCAGCGCAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.921

100

0.582