Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   KQ929_RS02060 Genome accession   NZ_CP076838
Coordinates   419334..420767 (-) Length   477 a.a.
NCBI ID   WP_207292472.1    Uniprot ID   -
Organism   Leclercia pneumoniae strain 49125     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414334..425767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ929_RS02030 (KQ929_02030) elbB 415924..416577 (+) 654 WP_207293879.1 isoprenoid biosynthesis glyoxalase ElbB -
  KQ929_RS02035 (KQ929_02035) mtgA 416586..417284 (+) 699 WP_242637320.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  KQ929_RS02040 (KQ929_02040) npr 417281..417553 (-) 273 WP_040073866.1 PTS phosphocarrier protein NPr -
  KQ929_RS02045 (KQ929_02045) rapZ 417550..418404 (-) 855 WP_040073867.1 RNase adapter RapZ -
  KQ929_RS02050 (KQ929_02050) ptsN 418450..418941 (-) 492 WP_040073868.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KQ929_RS02055 (KQ929_02055) hpf 419024..419311 (-) 288 WP_010436063.1 ribosome hibernation promoting factor -
  KQ929_RS02060 (KQ929_02060) rpoN/rpoN1 419334..420767 (-) 1434 WP_207292472.1 RNA polymerase factor sigma-54 Machinery gene
  KQ929_RS02065 (KQ929_02065) lptB 420816..421541 (-) 726 WP_040073870.1 LPS export ABC transporter ATP-binding protein -
  KQ929_RS02070 (KQ929_02070) lptA 421548..422102 (-) 555 WP_040073871.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  KQ929_RS02075 (KQ929_02075) lptC 422071..422646 (-) 576 WP_040073872.1 LPS export ABC transporter periplasmic protein LptC -
  KQ929_RS02080 (KQ929_02080) kdsC 422643..423209 (-) 567 WP_207293878.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  KQ929_RS02085 (KQ929_02085) kdsD 423224..424210 (-) 987 WP_046885778.1 arabinose-5-phosphate isomerase KdsD -
  KQ929_RS02090 (KQ929_02090) - 424224..425201 (-) 978 WP_040073875.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54057.93 Da        Isoelectric Point: 4.3696

>NTDB_id=578409 KQ929_RS02060 WP_207292472.1 419334..420767(-) (rpoN/rpoN1) [Leclercia pneumoniae strain 49125]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDVSWDEIYTAGTPSGNRVDYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLED
ILESIGDADIDLEEVEAVLKRVQRFDPIGVAARDLRDCLLIQLSQFVKETPWIEEARLIVSDHLDLLANHDFRALMRVTR
LKEDVLKAAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGLWTVELNSDSIPRLQINQQYASMCTSSRNDSDNQFIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFERGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=578409 KQ929_RS02060 WP_207292472.1 419334..420767(-) (rpoN/rpoN1) [Leclercia pneumoniae strain 49125]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAGCAGCTGGCAATGACGCCACAATTACAGCAGGCAATCCGCCTGTTGCA
ATTGTCTACGCTTGAACTGCAGCAGGAGCTCCAGCAAGCGCTGGAGAGCAATCCTCTGCTTGAGCAAACCGATCTTCACG
ATGAGGTAGACACCCAGCAGTCCCAGGACACCGAGGCACTTGATACCGCCGATGCCCTTGAGCAGAAAGAGATGCCCGAC
GAGCTGCCGCTGGATGTCAGCTGGGATGAGATCTACACCGCCGGCACCCCTTCCGGTAACCGCGTGGATTACCAGGACGA
TGAACTGCCGGTTTATCAGGGGGAAACGACCCAGTCACTGCAGGATTATCTGATGTGGCAGGTGGAGCTGACCCCGTTCT
CCGATACCGATCGCGCCATCGCCACCTCTATCGTCGATGCTGTTGATGACACCGGTTATCTCACCGTAACGCTGGAAGAT
ATTCTTGAAAGCATTGGCGATGCCGATATCGATCTGGAAGAGGTCGAAGCGGTTCTGAAGCGAGTTCAGCGCTTTGATCC
CATTGGCGTAGCGGCGAGAGATTTACGTGACTGCCTGCTTATACAGCTGTCGCAGTTTGTGAAAGAGACGCCCTGGATCG
AAGAGGCCAGACTGATCGTCAGCGATCATCTGGATCTACTGGCAAATCATGACTTCCGGGCCTTAATGCGGGTGACGCGG
CTAAAAGAAGATGTGCTCAAGGCCGCCGTGAATCTGATTCAGTCACTGGATCCCCGTCCGGGTCAGTCGATCCAGACCAG
CGAGCCCGAGTATGTTATCCCCGACGTGCTGGTGCGAAAACATAACGGTCTGTGGACCGTAGAACTTAACTCCGACAGCA
TTCCCCGCCTGCAAATTAACCAGCAATACGCCTCAATGTGCACCAGCTCGCGCAACGATTCCGATAACCAGTTTATTCGC
AGTAATCTGCAGGAAGCGCGCTGGCTGATTAAAAGCCTTGAGAGCCGTAACGATACCCTGCTGCGCGTCAGCCGCTGTAT
CGTCGAGCAACAGCAGGCCTTTTTCGAACGGGGCGAAGAGTACATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAAATGCACGAATCCACGATTTCCCGCGTCACTACGCAGAAGTATCTGCATAGCCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCTAGCCATGTTAATACCGAGGGCGGCGGCGAAGCATCGTCGACAGCCATCCGTGCGCTGGTGAAGAAATT
GATCGCCGCGGAAAACCCCGCGAAACCACTGAGTGACAGTAAGTTAACCACCATGCTGTCGGATCAAGGTATCATGGTGG
CTCGCCGCACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAGCAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48