Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MTX71_RS21140 Genome accession   NZ_CP094677
Coordinates   4511203..4512645 (+) Length   480 a.a.
NCBI ID   WP_121377769.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pa150     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4506203..4517645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTX71_RS21120 (MTX71_21085) - 4506871..4508442 (-) 1572 WP_073658801.1 DUF4129 domain-containing protein -
  MTX71_RS21125 (MTX71_21090) - 4508429..4509409 (-) 981 WP_003112783.1 stage II sporulation protein M -
  MTX71_RS21130 (MTX71_21095) - 4509406..4510203 (-) 798 WP_003123273.1 RDD family protein -
  MTX71_RS21135 (MTX71_21100) - 4510241..4510978 (-) 738 WP_003101171.1 hypothetical protein -
  MTX71_RS21140 (MTX71_21105) sbcB 4511203..4512645 (+) 1443 WP_121377769.1 exodeoxyribonuclease I Machinery gene
  MTX71_RS21145 (MTX71_21110) mvaT 4512730..4513104 (-) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  MTX71_RS21150 (MTX71_21115) purU 4513364..4514215 (+) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  MTX71_RS21155 (MTX71_21120) - 4514265..4514477 (+) 213 WP_023436359.1 hypothetical protein -
  MTX71_RS21160 (MTX71_21125) - 4514452..4515453 (-) 1002 WP_003093885.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  MTX71_RS21165 (MTX71_21130) - 4515450..4516211 (-) 762 WP_003093883.1 DUF2334 domain-containing protein -
  MTX71_RS21170 (MTX71_21135) - 4516204..4517320 (-) 1117 Protein_4172 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55519.84 Da        Isoelectric Point: 5.5542

>NTDB_id=578205 MTX71_RS21140 WP_121377769.1 4511203..4512645(+) (sbcB) [Pseudomonas aeruginosa strain Pa150]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIVLARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=578205 MTX71_RS21140 WP_121377769.1 4511203..4512645(+) (sbcB) [Pseudomonas aeruginosa strain Pa150]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAACTGGCGCAGCCGGCGACCTGCGTGGCTGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGT
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAAGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGTTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTTCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44