Detailed information NTG0578116

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: KQ253_RS04080
• Genome accession: NZ_CP076812
• Coordinates: 840140..840841 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594590.1
• Uniprot ID: A0A427R546
• Organism: Acinetobacter baumannii strain UC23022
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 835140..845841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ253_RS04045 (KQ253_04005)	kdsB	835663..836424 (+)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KQ253_RS04050 (KQ253_04010)	-	836436..837416 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
KQ253_RS04055 (KQ253_04015)	-	837428..837769 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
KQ253_RS04060 (KQ253_04020)	-	837787..838560 (+)	774	WP_000497301.1	TatD family hydrolase	-
KQ253_RS04065 (KQ253_04025)	-	838598..839206 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
KQ253_RS04070 (KQ253_04030)	-	839216..839770 (+)	555	WP_000841373.1	type II secretion system protein	-
KQ253_RS04075 (KQ253_04035)	xcpV	839760..840140 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
KQ253_RS04080 (KQ253_04040)	xcpW	840140..840841 (+)	702	WP_000594590.1	type II secretion system minor pseudopilin GspJ	Machinery gene
KQ253_RS04085 (KQ253_04045)	gspK	840841..841800 (+)	960	WP_000301471.1	type II secretion system minor pseudopilin GspK	-
KQ253_RS04090 (KQ253_04050)	-	842031..842627 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
KQ253_RS04095 (KQ253_04055)	ung	842678..843391 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
KQ253_RS04100 (KQ253_04060)	-	843388..844512 (+)	1125	WP_086241960.1	enoyl-CoA hydratase/isomerase family protein	-
KQ253_RS04105 (KQ253_04065)	tadA	844519..845022 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
KQ253_RS04110 (KQ253_04070)	-	845092..845535 (+)	444	WP_001246674.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26627.52 Da
• Isoelectric Point: 9.3468

>NTDB_id=578116 KQ253_RS04080 WP_000594590.1 840140..840841(+) (xcpW) [Acinetobacter baumannii strain UC23022]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWTYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=578116 KQ253_RS04080 WP_000594590.1 840140..840841(+) (xcpW) [Acinetobacter baumannii strain UC23022]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGACTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A427R546

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991