Detailed information NTG0578115

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: L6J92_RS33030
• Genome accession: NZ_CP094676
• Coordinates: 7716278..7717276 (-)
• Length: 332 a.a.
• NCBI ID: WP_031044499.1
• Uniprot ID: A0A191UZ34
• Organism: Streptomyces sp. CB09030
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 7711278..7722276

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6J92_RS33010 (L6J92_33010)	pfkB	7712070..7713017 (-)	948	WP_031044512.1	1-phosphofructokinase	-
L6J92_RS33015 (L6J92_33015)	-	7713014..7713775 (-)	762	WP_031044509.1	DeoR/GlpR family DNA-binding transcription regulator	-
L6J92_RS33020 (L6J92_33020)	-	7714041..7715012 (+)	972	WP_195889733.1	WYL domain-containing protein	-
L6J92_RS33025 (L6J92_33025)	-	7715047..7715799 (-)	753	WP_243782745.1	TetR family transcriptional regulator	-
L6J92_RS33030 (L6J92_33030)	rpoS	7716278..7717276 (-)	999	WP_031044499.1	sigma-70 family RNA polymerase sigma factor	Regulator
L6J92_RS33035 (L6J92_33035)	-	7717499..7718017 (+)	519	WP_224293955.1	GNAT family N-acetyltransferase	-
L6J92_RS33040 (L6J92_33040)	-	7718062..7718823 (-)	762	WP_037772701.1	class III extradiol ring-cleavage dioxygenase	-
L6J92_RS33045 (L6J92_33045)	-	7718987..7719583 (+)	597	WP_224296731.1	MarR family transcriptional regulator	-
L6J92_RS33050 (L6J92_33050)	-	7719696..7721240 (-)	1545	WP_031044493.1	MFS transporter	-
L6J92_RS33055 (L6J92_33055)	-	7721432..7722085 (-)	654	WP_243782746.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37140.83 Da
• Isoelectric Point: 4.9735

>NTDB_id=578115 L6J92_RS33030 WP_031044499.1 7716278..7717276(-) (rpoS) [Streptomyces sp. CB09030]
MATRAVARRKSATGETSGAATSVRANGGELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGYEETGAD
ATREELQALIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARSTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=578115 L6J92_RS33030 WP_031044499.1 7716278..7717276(-) (rpoS) [Streptomyces sp. CB09030]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGGCGCGGCAACCAGCGTCCGCGCCAACGG
CGGAGAGCTCGCCGACCGCGATCTGGTCGGCATGTACCTCGACGAGATCGCCCGCACACCCCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGACCATCGAGGCCGGTGTGTTCGCGCGGCAGGTCCTCGAAGGCTATGAGGAGACGGGGGCGGAC
GCCACCCGGGAGGAACTCCAGGCCCTGATCGACGAGAGCGAGCGGGCCAAGGACGTCTTCATCCGCTCCAACCTCCGTCT
CGTCGTCGCGGTCGCCCGGCGCTACCCGCGCAGTGGCCTGCCGCTCCTGGACCTGATCCAGGAGGGCAACGCCGGTCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGGCAGGCCATC
ACCCGGTCCATCGCCGACCAGTCGCGCACCATCCGGCTGCCCGTGCACCTGGTGGAGGAGCTGGGCCGGATCCGGCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGAGCCGGAGCCCGCGGAGATCGCGGCCGAGCTGGGCTCGACACCGGAGC
GCGTCACCGACGTGCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACGCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCGGTGCTGACCCTGCTGCGCAGCGAGGAACTGGACGA
CCTCATCGGCCGCCTCGACCCGCGCACCGCGTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACCC
TCACCGAGGTCGGCAAGGAGCACGGTCTCACGCGTGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTCGAACTGAAG
AAGCTGGCCCGCTCCACCGGCTTCGAGGCGGCGGCGTAG

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

3D structure

• AlphaFold DB: A0A191UZ34

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364