Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ECBG_RS06315 Genome accession   NC_020995
Coordinates   1400975..1402648 (+) Length   557 a.a.
NCBI ID   WP_015509509.1    Uniprot ID   C9A7C6
Organism   Enterococcus casseliflavus EC20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1395975..1407648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECBG_RS06285 (ECBG_00650) - 1396295..1397146 (+) 852 WP_015509505.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  ECBG_RS06290 (ECBG_00651) xseA 1397147..1398499 (+) 1353 WP_015509506.1 exodeoxyribonuclease VII large subunit -
  ECBG_RS06295 (ECBG_00652) - 1398480..1398701 (+) 222 WP_005225774.1 exodeoxyribonuclease VII small subunit -
  ECBG_RS06300 (ECBG_00653) - 1398698..1399594 (+) 897 WP_015509507.1 polyprenyl synthetase family protein -
  ECBG_RS06305 (ECBG_00654) - 1399591..1400412 (+) 822 WP_015509508.1 TlyA family RNA methyltransferase -
  ECBG_RS06310 (ECBG_00655) argR 1400510..1400959 (+) 450 WP_005225777.1 arginine repressor -
  ECBG_RS06315 (ECBG_00656) recN 1400975..1402648 (+) 1674 WP_015509509.1 DNA repair protein RecN Machinery gene
  ECBG_RS06320 (ECBG_00657) - 1402744..1403475 (+) 732 WP_015509510.1 alpha/beta hydrolase -
  ECBG_RS06325 (ECBG_00658) - 1403876..1404730 (+) 855 WP_015509511.1 phosphate ABC transporter substrate-binding protein PstS -
  ECBG_RS06330 (ECBG_00659) pstC 1404828..1405748 (+) 921 WP_005225781.1 phosphate ABC transporter permease subunit PstC -
  ECBG_RS06335 (ECBG_00660) pstA 1405748..1406632 (+) 885 WP_005225782.1 phosphate ABC transporter permease PstA -
  ECBG_RS06340 (ECBG_00661) pstB 1406646..1407452 (+) 807 WP_005225783.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62658.82 Da        Isoelectric Point: 4.5175

>NTDB_id=57811 ECBG_RS06315 WP_015509509.1 1400975..1402648(+) (recN) [Enterococcus casseliflavus EC20]
MLLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGSRGSSDYLRQGAEKCRLEGIFEWPNQQEFKELT
ADLGIDEEEVLIVQRDISQSGKTICRVNGRTVTLSVLRQIGLFLVDIQGQNEHQELLQPEKHLALMDGFGDDAFKAELAN
YRQAYQAYRSLEKHVRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEEQLIDEREKLTNYQKIVDALGQSYGALSAEE
VNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYYLLQDAATDISRQVDNLELDEGRLEEVISRLETIRQLKRKYGESI
PVILAYYDEISKEISESAYTEGQLEQLEEELAQKAEAVWQLAEALHVKRRELAHRLEKEIVQELKELYMEHAQFEVRFAS
GLKQLSSSGFDTVEFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKIAK
IAANSQVLCITHLPQVAAVADNQYFIEKAIQEGRTETHVRKLSEEERVAEIARMLSGAEITDLTIEHARELLALAHR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=57811 ECBG_RS06315 WP_015509509.1 1400975..1402648(+) (recN) [Enterococcus casseliflavus EC20]
ATGCTTTTAGAATTGTCGATCCAAAATTTTGCGATTATCTCCAACCTGCACCTGTCTTTTCATGAGGGGATGACGGCTCT
AACAGGTGAAACAGGTGCTGGGAAATCAATCATTATCGATGCGATGGGCTTACTAGCAGGTAGCAGAGGATCCAGTGACT
ATTTGCGTCAAGGCGCAGAAAAATGCCGTTTGGAAGGGATTTTTGAATGGCCGAATCAGCAGGAGTTCAAAGAGCTGACC
GCAGATCTGGGTATTGATGAAGAGGAAGTTCTGATCGTACAACGGGATATCTCTCAATCGGGTAAAACTATTTGTCGTGT
AAATGGTCGAACCGTTACCTTGTCGGTTTTGCGCCAAATTGGCTTGTTTTTAGTTGATATCCAAGGACAAAATGAGCATC
AAGAGCTGCTGCAGCCAGAAAAACATTTGGCGTTGATGGATGGTTTTGGAGATGATGCCTTTAAAGCGGAACTTGCAAAT
TACCGTCAAGCCTATCAAGCCTATCGCTCCTTAGAAAAACATGTGCGGACCATTCAAGAAAATGAACAGCTCTATGTGCA
GCGAATGGACATGCTGCGTTTTCAACAAGAAGAGATCGCCCAAGCGGAATTGATGGAAAATGAAGAAGAGCAGCTGATCG
ATGAACGAGAAAAACTGACCAATTATCAAAAAATCGTGGATGCTCTAGGGCAAAGCTATGGCGCTCTATCCGCCGAAGAA
GTTAATAGCCTAGATGGAGTCAGTGTGGCATTATCAGAGATCCAGTCGATCGCCCATCTTGATCCTGCGTATGAAAAAAT
CAGTGAAGCGATCCAAAGTGCGTATTACTTGTTGCAAGATGCAGCCACTGATATTTCGCGGCAAGTCGACAACCTTGAAT
TAGATGAAGGCCGACTAGAAGAAGTCATTTCACGGCTGGAAACGATTCGTCAATTGAAGCGCAAATACGGGGAGTCAATT
CCTGTGATTCTTGCTTATTATGACGAGATCAGCAAAGAAATCAGCGAATCAGCCTATACGGAAGGTCAGTTGGAGCAATT
AGAAGAAGAGCTTGCCCAAAAAGCTGAAGCAGTTTGGCAGCTGGCGGAAGCCTTGCACGTCAAACGACGTGAATTGGCTC
ATCGTTTAGAAAAAGAAATCGTTCAAGAGTTAAAAGAGCTGTATATGGAGCACGCGCAATTTGAAGTACGGTTTGCATCT
GGCTTAAAACAATTAAGCAGCAGCGGCTTTGATACCGTGGAGTTTTATTTGACCACCAACCCCGGTGAAGGCATGAAACC
GTTAGTGCGAGTTGCTTCTGGAGGAGAGCTTTCTCGGATCTTATTAGCGCTTAAATCGATTTTCTCCCGCAAGCAAGGAA
TCACTAGTATTGTCTTTGATGAGGTGGATACTGGGGTCAGTGGCCGAGTAGCTCAGGCGATCGCCGAAAAAATCGCCAAG
ATCGCTGCGAATTCGCAAGTCTTGTGTATCACCCACTTGCCGCAAGTAGCGGCTGTGGCGGACAATCAATATTTTATCGA
AAAAGCAATTCAAGAAGGTCGGACAGAAACCCATGTCCGTAAATTATCAGAAGAAGAACGAGTGGCTGAGATCGCCCGTA
TGCTCTCAGGTGCAGAAATCACCGATTTAACGATCGAACATGCACGAGAACTATTGGCGCTGGCTCACCGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9A7C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.544

100

0.487

Multiple sequence alignment