Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   KQ254_RS12965 Genome accession   NZ_CP076807
Coordinates   2710524..2710904 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC20804     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2705524..2715904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ254_RS12935 (KQ254_12890) tadA 2705629..2706132 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  KQ254_RS12940 (KQ254_12895) - 2706153..2707277 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  KQ254_RS12945 (KQ254_12900) ung 2707274..2707987 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  KQ254_RS12950 (KQ254_12905) - 2708038..2708634 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  KQ254_RS12955 (KQ254_12910) gspK 2708864..2709823 (-) 960 WP_000301478.1 type II secretion system minor pseudopilin GspK -
  KQ254_RS12960 (KQ254_12915) xcpW 2709823..2710524 (-) 702 WP_109267335.1 type II secretion system minor pseudopilin GspJ Machinery gene
  KQ254_RS12965 (KQ254_12920) xcpV 2710524..2710904 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  KQ254_RS12970 (KQ254_12925) - 2710894..2711448 (-) 555 WP_004841361.1 type II secretion system protein -
  KQ254_RS12975 (KQ254_12930) - 2711458..2712066 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  KQ254_RS12980 (KQ254_12935) - 2712104..2712877 (-) 774 WP_000497298.1 TatD family hydrolase -
  KQ254_RS12985 (KQ254_12940) - 2712895..2713236 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  KQ254_RS12990 (KQ254_12945) - 2713248..2714228 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  KQ254_RS12995 (KQ254_12950) kdsB 2714240..2715001 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=578103 KQ254_RS12965 WP_000836911.1 2710524..2710904(-) (xcpV) [Acinetobacter baumannii strain UC20804]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=578103 KQ254_RS12965 WP_000836911.1 2710524..2710904(-) (xcpV) [Acinetobacter baumannii strain UC20804]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1