Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   KQ254_RS01280 Genome accession   NZ_CP076807
Coordinates   277924..278250 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain UC20804     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 272924..283250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ254_RS01260 (KQ254_01255) - 273032..273661 (-) 630 WP_000219965.1 FHA domain-containing protein -
  KQ254_RS01265 (KQ254_01260) gspD 273702..275972 (-) 2271 WP_001196431.1 type II secretion system secretin GspD -
  KQ254_RS01270 (KQ254_01265) - 276014..276850 (-) 837 WP_000870031.1 type II secretion system protein N -
  KQ254_RS01275 (KQ254_01270) gspN 276850..277593 (-) 744 WP_000730345.1 type II secretion system protein N -
  KQ254_RS01280 (KQ254_01275) hns 277924..278250 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  KQ254_RS01285 (KQ254_01280) - 278445..278885 (-) 441 WP_000661569.1 thioesterase family protein -
  KQ254_RS01290 (KQ254_01285) - 278893..280086 (-) 1194 WP_181951916.1 heme biosynthesis protein HemY -
  KQ254_RS01295 (KQ254_01290) - 280096..280935 (-) 840 WP_001230194.1 hypothetical protein -
  KQ254_RS01300 (KQ254_01295) - 280944..281711 (-) 768 WP_000897416.1 uroporphyrinogen-III synthase -
  KQ254_RS01305 (KQ254_01300) hemC 281716..282633 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=578080 KQ254_RS01280 WP_000801427.1 277924..278250(-) (hns) [Acinetobacter baumannii strain UC20804]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=578080 KQ254_RS01280 WP_000801427.1 277924..278250(-) (hns) [Acinetobacter baumannii strain UC20804]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1