Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KK0981_RS00270 Genome accession   NZ_AP017971
Coordinates   44199..44969 (+) Length   256 a.a.
NCBI ID   WP_000616172.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain KK0981     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 39199..49969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KK0981_RS00250 (KK0981_00530) - 41207..41644 (+) 438 WP_000076487.1 CoA-binding protein -
  KK0981_RS12135 - 41685..41855 (+) 171 WP_050111560.1 hypothetical protein -
  KK0981_RS00260 (KK0981_00540) - 41874..42884 (-) 1011 WP_000009170.1 YeiH family protein -
  KK0981_RS00265 (KK0981_00550) - 43033..44202 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  KK0981_RS00270 (KK0981_00560) recO 44199..44969 (+) 771 WP_000616172.1 DNA repair protein RecO Machinery gene
  KK0981_RS00275 (KK0981_00570) plsX 44966..45958 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  KK0981_RS00280 (KK0981_00580) - 45964..46197 (+) 234 WP_000136447.1 acyl carrier protein -
  KK0981_RS00285 (KK0981_00590) - 46234..46533 (+) 300 Protein_47 transposase family protein -
  KK0981_RS00290 (KK0981_00600) blpU 46736..46966 (+) 231 WP_001093069.1 bacteriocin-like peptide BlpU -
  KK0981_RS12565 - 46969..47094 (+) 126 WP_001842754.1 PncF family bacteriocin immunity protein -
  KK0981_RS00295 - 47418..48744 (-) 1327 Protein_50 ISL3 family transposase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29778.25 Da        Isoelectric Point: 5.3615

>NTDB_id=57803 KK0981_RS00270 WP_000616172.1 44199..44969(+) (recO) [Streptococcus pneumoniae strain KK0981]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDASLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=57803 KK0981_RS00270 WP_000616172.1 44199..44969(+) (recO) [Streptococcus pneumoniae strain KK0981]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTATTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTTCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment