Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   KQ252_RS11945 Genome accession   NZ_CP076801
Coordinates   2492546..2492872 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain UC25604     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2487546..2497872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS11920 (KQ252_11900) hemC 2488163..2489080 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  KQ252_RS11925 (KQ252_11905) - 2489085..2489852 (+) 768 WP_000897420.1 uroporphyrinogen-III synthase -
  KQ252_RS11930 (KQ252_11910) - 2489861..2490700 (+) 840 WP_001230201.1 hypothetical protein -
  KQ252_RS11935 (KQ252_11915) - 2490710..2491903 (+) 1194 WP_045900567.1 hypothetical protein -
  KQ252_RS11940 (KQ252_11920) - 2491911..2492351 (+) 441 WP_000661569.1 thioesterase family protein -
  KQ252_RS11945 (KQ252_11925) hns 2492546..2492872 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  KQ252_RS11950 (KQ252_11930) gspN 2493205..2493948 (+) 744 WP_045900566.1 type II secretion system protein N -
  KQ252_RS11955 (KQ252_11935) - 2493948..2494784 (+) 837 WP_000870031.1 type II secretion system protein N -
  KQ252_RS11960 (KQ252_11940) gspD 2494826..2497102 (+) 2277 WP_024432837.1 type II secretion system secretin GspD -
  KQ252_RS11965 (KQ252_11945) - 2497143..2497772 (+) 630 WP_000219967.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=578012 KQ252_RS11945 WP_000801427.1 2492546..2492872(+) (hns) [Acinetobacter baumannii strain UC25604]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=578012 KQ252_RS11945 WP_000801427.1 2492546..2492872(+) (hns) [Acinetobacter baumannii strain UC25604]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1