Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   KQ252_RS08755 Genome accession   NZ_CP076801
Coordinates   1819636..1820109 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain UC25604     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1814636..1825109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS08740 (KQ252_08725) pilX 1817265..1818083 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KQ252_RS08745 (KQ252_08730) pilW 1818080..1819081 (-) 1002 WP_045900102.1 PilW family protein Machinery gene
  KQ252_RS08750 (KQ252_08735) pilV 1819082..1819642 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  KQ252_RS08755 (KQ252_08740) fimU 1819636..1820109 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KQ252_RS08760 (KQ252_08745) ispH 1820279..1821229 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KQ252_RS08765 (KQ252_08750) gmk 1821352..1821981 (+) 630 WP_000015937.1 guanylate kinase -
  KQ252_RS08770 (KQ252_08755) rpoZ 1822054..1822332 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KQ252_RS08775 (KQ252_08760) - 1822371..1822501 (+) 131 Protein_1715 hypothetical protein -
  KQ252_RS08780 (KQ252_08765) - 1822541..1824646 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=577997 KQ252_RS08755 WP_001214065.1 1819636..1820109(-) (fimU) [Acinetobacter baumannii strain UC25604]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=577997 KQ252_RS08755 WP_001214065.1 1819636..1820109(-) (fimU) [Acinetobacter baumannii strain UC25604]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCATT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCTGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1