Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KQ252_RS08375 Genome accession   NZ_CP076801
Coordinates   1742089..1742724 (+) Length   211 a.a.
NCBI ID   WP_045900139.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC25604     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1737089..1747724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS08360 (KQ252_08345) adeT2 1738149..1739135 (-) 987 WP_000712910.1 putative multidrug efflux protein AdeT2 -
  KQ252_RS08365 (KQ252_08350) - 1739215..1740030 (-) 816 WP_000547774.1 NAD(P)H-binding protein -
  KQ252_RS08370 (KQ252_08355) recG 1740051..1742096 (+) 2046 WP_002068928.1 ATP-dependent DNA helicase RecG -
  KQ252_RS08375 (KQ252_08360) comF 1742089..1742724 (+) 636 WP_045900139.1 ComF family protein Machinery gene
  KQ252_RS08380 (KQ252_08365) - 1742727..1743128 (-) 402 WP_000849705.1 NUDIX domain-containing protein -
  KQ252_RS08385 (KQ252_08370) - 1743143..1743724 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  KQ252_RS08390 (KQ252_08375) - 1743882..1744895 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  KQ252_RS08395 (KQ252_08380) - 1744965..1745252 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  KQ252_RS08400 (KQ252_08385) - 1745264..1745905 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  KQ252_RS08405 (KQ252_08390) - 1745932..1746612 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  KQ252_RS08410 (KQ252_08395) mlaE 1746612..1747388 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24581.69 Da        Isoelectric Point: 9.7140

>NTDB_id=577990 KQ252_RS08375 WP_045900139.1 1742089..1742724(+) (comF) [Acinetobacter baumannii strain UC25604]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLSNLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=577990 KQ252_RS08375 WP_045900139.1 1742089..1742724(+) (comF) [Acinetobacter baumannii strain UC25604]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCTCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(160-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986