Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   KQ252_RS08025 Genome accession   NZ_CP076801
Coordinates   1683865..1684749 (-) Length   294 a.a.
NCBI ID   WP_000914779.1    Uniprot ID   A0A0Q1E5B1
Organism   Acinetobacter baumannii strain UC25604     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1678865..1689749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS08010 (KQ252_07995) miaB 1680712..1682163 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  KQ252_RS08015 (KQ252_08000) - 1682201..1683289 (+) 1089 WP_000122983.1 PhoH family protein -
  KQ252_RS08020 (KQ252_08005) ybeY 1683299..1683775 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  KQ252_RS08025 (KQ252_08010) tonB2 1683865..1684749 (-) 885 WP_000914779.1 energy transducer TonB Machinery gene
  KQ252_RS08030 (KQ252_08015) - 1684980..1685651 (+) 672 WP_001193961.1 hypothetical protein -
  KQ252_RS08035 (KQ252_08020) - 1685809..1686522 (+) 714 WP_000201544.1 DUF3108 domain-containing protein -
  KQ252_RS08040 (KQ252_08025) - 1686595..1687170 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  KQ252_RS08045 (KQ252_08030) wrbA 1687223..1687816 (-) 594 WP_001183355.1 NAD(P)H:quinone oxidoreductase -
  KQ252_RS08050 (KQ252_08035) - 1688104..1689351 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33652.51 Da        Isoelectric Point: 9.0935

>NTDB_id=577988 KQ252_RS08025 WP_000914779.1 1683865..1684749(-) (tonB2) [Acinetobacter baumannii strain UC25604]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPTPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=577988 KQ252_RS08025 WP_000914779.1 1683865..1684749(-) (tonB2) [Acinetobacter baumannii strain UC25604]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCATCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAACGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q1E5B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997