Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CCX78_RS09790 Genome accession   NZ_AP017931
Coordinates   1920103..1920978 (-) Length   291 a.a.
NCBI ID   WP_016264319.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1915103..1925978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS09760 (LASAK_01950) nrdI 1915707..1916174 (+) 468 WP_172425599.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  CCX78_RS09765 (LASAK_01951) - 1916171..1916839 (-) 669 WP_016264323.1 HAD hydrolase-like protein -
  CCX78_RS09770 (LASAK_01952) - 1917219..1917983 (-) 765 WP_096585785.1 prolyl oligopeptidase family serine peptidase -
  CCX78_RS09775 (LASAK_01953) - 1918020..1918694 (-) 675 WP_076631988.1 DUF1129 domain-containing protein -
  CCX78_RS09780 (LASAK_01954) ychF 1918712..1919812 (-) 1101 WP_056946778.1 redox-regulated ATPase YchF -
  CCX78_RS09785 (LASAK_01955) - 1919836..1920084 (-) 249 WP_011373735.1 DUF951 domain-containing protein -
  CCX78_RS09790 (LASAK_01956) spo0J 1920103..1920978 (-) 876 WP_016264319.1 ParB/RepB/Spo0J family partition protein Regulator
  CCX78_RS09795 (LASAK_01957) - 1920968..1921735 (-) 768 WP_016264318.1 ParA family protein -
  CCX78_RS09800 (LASAK_01958) noc 1921747..1922646 (-) 900 WP_076647658.1 nucleoid occlusion protein -
  CCX78_RS09805 (LASAK_01959) rsmG 1922646..1923386 (-) 741 WP_011373731.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  CCX78_RS09810 (LASAK_01960) - 1923755..1925095 (+) 1341 WP_011373730.1 nucleobase:cation symporter-2 family protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32411.38 Da        Isoelectric Point: 9.8304

>NTDB_id=57796 CCX78_RS09790 WP_016264319.1 1920103..1920978(-) (spo0J) [Latilactobacillus sakei strain LK-145]
MVNKNGKGLGRGLEAVFSAFEGPNKNRADELVEEIALEDIRPNPYQPRKTFDEAALAELAASIKKSGVFQPIIVRKSING
YELIAGERRFRASKLAGKTTIPAITRQFDEEAMMEIAVLENLQREDLTPLEEAQAYDTLLKKLNLTQAEVSERLGKSRPY
IANYLRLLGLPADVKQLLQEGQLSMGQARTLLSLKKKSQISALAKRTIAESLTVRQLEQLVNQMNQTKAAKVAKTKIKSP
YIQASENQLVDKFDTKVNIAMNSKGRGKIEIDYGTVEDLNRILALLDVNID

Nucleotide


Download         Length: 876 bp        

>NTDB_id=57796 CCX78_RS09790 WP_016264319.1 1920103..1920978(-) (spo0J) [Latilactobacillus sakei strain LK-145]
ATGGTCAATAAAAATGGTAAAGGACTCGGTCGAGGACTCGAAGCTGTTTTTTCAGCATTTGAAGGACCCAATAAGAATCG
TGCGGATGAACTCGTTGAAGAGATTGCCCTCGAGGATATTCGTCCCAATCCTTATCAACCACGTAAAACGTTTGATGAGG
CAGCACTAGCAGAACTTGCTGCTTCCATTAAAAAATCAGGCGTTTTCCAACCGATTATTGTGCGTAAAAGCATTAATGGT
TACGAATTAATCGCTGGCGAACGCCGTTTTCGTGCTTCTAAATTAGCTGGTAAAACTACGATTCCAGCGATTACGCGTCA
ATTCGATGAAGAAGCGATGATGGAAATTGCGGTCTTAGAAAATCTTCAACGGGAAGATTTAACACCGCTAGAAGAAGCAC
AAGCCTATGACACCCTTTTGAAGAAGTTAAACTTAACGCAAGCTGAAGTGTCAGAACGCTTAGGCAAGAGTCGCCCTTAC
ATTGCCAACTACTTACGCCTGTTGGGCTTGCCAGCAGATGTTAAGCAATTGTTGCAAGAAGGCCAACTCTCAATGGGACA
AGCACGGACGCTTTTATCATTGAAGAAAAAGAGTCAAATTAGCGCCCTCGCCAAGCGGACGATTGCCGAAAGTTTAACGG
TGCGCCAATTAGAACAACTCGTCAACCAAATGAATCAAACCAAAGCGGCTAAAGTCGCTAAGACTAAGATTAAATCACCT
TACATTCAAGCGAGTGAAAACCAATTAGTCGATAAATTCGATACCAAGGTCAATATTGCGATGAACAGTAAGGGCCGGGG
TAAAATCGAAATTGATTACGGCACGGTAGAGGATTTAAACCGAATCTTGGCTTTACTAGATGTCAATATTGATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(139-166)

HTH domain found in ParB protein (HTH_ParB)

(173-223)

ParB/Sulfiredoxin domain (ParB_N)

(33-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.629

86.254

0.368

Multiple sequence alignment