Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   CCX78_RS09485 Genome accession   NZ_AP017931
Coordinates   1865017..1865823 (-) Length   268 a.a.
NCBI ID   WP_011373794.1    Uniprot ID   Q38ZJ7
Organism   Latilactobacillus sakei strain LK-145     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1860017..1870823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS09465 (LASAK_01891) add 1860731..1861750 (+) 1020 WP_096585749.1 adenosine deaminase -
  CCX78_RS09470 (LASAK_01892) - 1861813..1862460 (-) 648 WP_076981366.1 hypothetical protein -
  CCX78_RS09475 (LASAK_01893) rlmH 1862600..1863079 (-) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  CCX78_RS09480 (LASAK_01894) htrA 1863615..1864883 (-) 1269 WP_056946885.1 S1C family serine protease Regulator
  CCX78_RS09485 (LASAK_01895) vicX 1865017..1865823 (-) 807 WP_011373794.1 MBL fold metallo-hydrolase Regulator
  CCX78_RS09490 (LASAK_01896) - 1865858..1866679 (-) 822 WP_056946883.1 two-component system regulatory protein YycI -
  CCX78_RS09495 (LASAK_01897) - 1866684..1868015 (-) 1332 WP_011373792.1 YycH family regulatory protein -
  CCX78_RS09500 (LASAK_01898) walK 1868005..1869903 (-) 1899 WP_011373791.1 cell wall metabolism sensor histidine kinase WalK -
  CCX78_RS09505 (LASAK_01899) yycF 1869913..1870626 (-) 714 WP_011373790.1 response regulator YycF -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29709.33 Da        Isoelectric Point: 5.0105

>NTDB_id=57794 CCX78_RS09485 WP_011373794.1 1865017..1865823(-) (vicX) [Latilactobacillus sakei strain LK-145]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKEVDSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=57794 CCX78_RS09485 WP_011373794.1 1865017..1865823(-) (vicX) [Latilactobacillus sakei strain LK-145]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
TCAAAAAATATTAGTCGATGCGGGGATGAGTGGCAAACGGGTTCAGGATTTAATGCATAGCATTGGTCGGGATTTAAAAG
AGGTTGATAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGCGGTGTTGGCGTCTTAGCCCGCCGTTACGGGATT
GATGTGTACGCCAATCAACCGACTTGGGATGCGATGGCGTCAATTATTGGCACCGTCCCTGATGAACATAAGCACGTCTT
TGAGATGGGCAAAACCAAAACACTCGGCGATATCGATGTTGAAAGTTATGGTGTGTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAACAACCGGGCCTTCGCAATCTTAACGGATACGGGGTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCGGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGGATGGGAAAATATCCGTGGTCGCT
TAAACAACGGATCCTTAGTGATACTGGACATCTGTCTAACGAAGATGGCGCTTCAGCCTTAATGGCTTTTATGGGGCAAC
AAACAAAACGCGTTTTCCTAGGCCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCGTCAATT
TTAGAACAACATGATTATGGTGTTGGCACGGACTTTGAAATTTTAGATACAGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38ZJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.073

96.642

0.571