Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   CCX78_RS09225 Genome accession   NZ_AP017931
Coordinates   1810403..1812694 (-) Length   763 a.a.
NCBI ID   WP_096585696.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1805403..1817694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS09210 (LASAK_01838) - 1806131..1807498 (-) 1368 WP_096585687.1 hypothetical protein -
  CCX78_RS09215 (LASAK_01839) guaA 1807638..1809191 (-) 1554 WP_096585690.1 glutamine-hydrolyzing GMP synthase -
  CCX78_RS09220 (LASAK_01840) coaA 1809358..1810287 (-) 930 WP_096585693.1 type I pantothenate kinase -
  CCX78_RS09225 (LASAK_01841) helD 1810403..1812694 (-) 2292 WP_096585696.1 RNA polymerase recycling motor HelD Machinery gene
  CCX78_RS09230 (LASAK_01842) - 1812788..1813135 (-) 348 WP_096585699.1 fluoride efflux transporter FluC -
  CCX78_RS09235 (LASAK_01843) crcB 1813132..1813539 (-) 408 WP_096585700.1 fluoride efflux transporter CrcB -
  CCX78_RS09240 (LASAK_01844) - 1813676..1815514 (+) 1839 WP_096585703.1 monovalent cation:proton antiporter family protein -
  CCX78_RS09245 (LASAK_01845) - 1815588..1816490 (+) 903 WP_011373844.1 proline-specific peptidase family protein -
  CCX78_RS09250 (LASAK_01846) - 1816856..1817314 (-) 459 WP_011373843.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 87685.63 Da        Isoelectric Point: 6.3686

>NTDB_id=57792 CCX78_RS09225 WP_096585696.1 1810403..1812694(-) (helD) [Latilactobacillus sakei strain LK-145]
MTDVQKSLEQSRLTEIIGLIKKAETHFEGAVKRAKSEEKEINENFFNDVRLNFNNDSAMTETAVSIEQQRQMLQERNHSW
QQSSRQLETLQKMEKTPYFARVDFQEKGEPKSESIYIGLGSFTDTDDHFLIYDWRAPISSIYYEGKTGAVTYQTPDGPQD
VNISLKRQFLIEDGQIKALFDTQETIGDQMLLEVLGEKSDTQMKSIVTTIQREQNQIIRNTDADLLFVQGAAGSGKTSAI
LQRIAFLLYRYRGNLDSSQVIMFSPNQLFNDYIADVLPELGEQNMIQMTYFQYVARRLPNMGVQSLFDQFETPVNETDGR
ISRLKESLVFYKAVKKYAAHLEKADMRFRDMKVEGRVLITKEHINDVYYRFNENYHLGNRLDATKESLLRTLSHKVDHET
KADWVTEQAENMSDEEIRELMSGKDFKTGDAESKFIAKQIVLEAFKPVRRSIQRNRFLSIQAQYIHFLRVVPQLVKLADF
DITEEQWQDHVTHFVAQLKAKQMTLQDVTPYLHLYDLMTGKKGERDMRFVFIDEIQDYTPYELAFLKLHFPKARFTLLGD
LNQAIFTKGNSTNLLQQVQQLFDAQNTKVVQLTRSYRSTQQVTDFTKGLLKGGQAIEAFNRVGDKPNLIVRQSEAELVAD
VNRQLAANEADKLSTAIITKTLVQAQALTKMLKETGTKVTLIRSENQRLAAGTLVVPSFLAKGLEFDAIIGWQISAANYN
HEDQRQLLYTICSRAMHRLTLLATDALSPLIDNVDPEKYTLTK

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=57792 CCX78_RS09225 WP_096585696.1 1810403..1812694(-) (helD) [Latilactobacillus sakei strain LK-145]
TTGACTGACGTACAGAAATCATTGGAACAAAGCCGATTAACAGAAATTATTGGTTTAATTAAAAAAGCTGAGACCCATTT
TGAAGGGGCTGTTAAGCGCGCAAAATCGGAAGAAAAAGAAATTAACGAGAACTTCTTCAACGATGTTCGCCTTAACTTCA
ACAACGATTCCGCGATGACTGAAACCGCCGTTTCGATTGAACAGCAGCGGCAAATGCTACAAGAACGCAATCACTCGTGG
CAACAATCTTCACGGCAATTGGAAACCTTGCAAAAGATGGAAAAGACGCCATACTTTGCCCGTGTTGATTTTCAAGAAAA
GGGTGAACCTAAATCCGAATCAATTTATATCGGGTTAGGCTCATTTACAGATACCGACGATCATTTCTTAATTTATGATT
GGCGGGCACCAATTTCATCAATTTACTATGAAGGTAAGACGGGTGCGGTGACGTACCAAACACCAGACGGCCCGCAAGAT
GTGAATATCTCACTTAAACGCCAATTCTTAATTGAAGATGGCCAAATCAAGGCCTTATTTGATACGCAAGAAACGATTGG
CGATCAAATGTTATTAGAAGTGTTAGGTGAAAAATCCGATACGCAGATGAAGAGTATCGTCACGACGATTCAACGTGAAC
AAAATCAGATTATCCGTAATACCGATGCTGATTTGTTATTCGTTCAAGGGGCAGCTGGCTCAGGGAAAACATCAGCTATC
TTGCAACGCATTGCGTTTTTACTCTATCGCTATCGGGGGAATTTAGATTCGAGCCAAGTGATCATGTTCTCGCCTAACCA
ATTATTCAACGACTACATCGCAGATGTGTTGCCTGAATTGGGCGAACAAAATATGATTCAAATGACTTACTTCCAATATG
TGGCACGCCGGTTACCAAACATGGGGGTCCAGAGCCTCTTTGACCAATTCGAAACACCGGTTAACGAAACCGATGGTCGG
ATTAGTCGCTTAAAAGAAAGTCTCGTCTTTTATAAGGCTGTTAAAAAATACGCTGCGCATCTTGAAAAAGCCGACATGCG
CTTCCGCGATATGAAGGTCGAGGGCCGCGTCTTGATTACAAAAGAGCATATCAACGACGTTTATTACCGCTTCAATGAAA
ACTACCATCTCGGCAATCGATTAGATGCGACTAAAGAAAGCTTGTTACGGACATTGAGCCACAAGGTTGATCACGAAACC
AAAGCTGACTGGGTGACTGAACAAGCCGAAAATATGAGTGATGAAGAAATCCGTGAATTGATGTCTGGTAAAGATTTCAA
GACGGGTGATGCTGAAAGCAAGTTTATCGCCAAGCAAATCGTGTTAGAGGCCTTCAAACCGGTTCGCCGGTCTATTCAAC
GCAATCGCTTCTTAAGCATCCAGGCGCAATATATTCACTTCTTACGGGTTGTGCCACAACTTGTGAAGTTAGCCGACTTC
GATATTACAGAAGAGCAATGGCAAGACCATGTTACCCATTTCGTCGCGCAATTGAAGGCTAAGCAGATGACGTTGCAAGA
TGTCACGCCATATCTTCATCTCTACGATTTGATGACGGGTAAAAAAGGCGAACGGGATATGCGCTTTGTCTTCATCGATG
AGATTCAAGACTACACGCCTTATGAATTGGCCTTCTTGAAGCTCCACTTCCCTAAGGCGCGCTTCACATTATTGGGCGAT
TTGAACCAAGCGATTTTCACTAAGGGCAACAGCACAAATCTCTTGCAACAAGTCCAACAATTATTTGATGCTCAAAATAC
AAAAGTGGTGCAATTAACGCGTTCATACCGGTCAACACAACAAGTGACTGACTTTACCAAGGGCTTATTAAAAGGTGGCC
AAGCCATCGAAGCCTTCAATCGCGTTGGCGATAAACCAAACTTGATTGTGCGCCAATCAGAAGCTGAGCTAGTGGCTGAT
GTGAACCGCCAATTAGCAGCAAATGAAGCCGACAAATTGTCGACAGCAATCATTACCAAGACTTTGGTGCAAGCCCAAGC
ATTGACGAAGATGCTCAAGGAAACAGGTACGAAAGTCACCTTGATTCGTTCCGAAAACCAACGCTTAGCAGCCGGGACAT
TAGTGGTCCCAAGTTTCTTAGCTAAAGGTTTGGAATTCGATGCCATTATTGGCTGGCAAATCAGTGCCGCCAACTACAAT
CATGAAGATCAACGTCAATTGCTCTACACGATTTGTTCAAGAGCAATGCATCGCTTGACCTTGTTAGCCACAGACGCACT
TTCACCATTGATTGATAATGTCGATCCAGAAAAATATACATTAACGAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(214-566)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(700-741)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

38.372

100

0.389

Multiple sequence alignment