Detailed information
Bioinformatically predicted
Overview
| Name | clpE | Type | Regulator |
| Locus tag | CCX78_RS08865 | Genome accession | NZ_AP017931 |
| Coordinates | 1731515..1733638 (-) | Length | 707 a.a. |
| NCBI ID | WP_016264495.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain LK-145 | ||
| Function | repress competence development (at the early growth phase) (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1726515..1738638
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCX78_RS08850 (LASAK_01756) | - | 1729069..1730061 (-) | 993 | WP_096585614.1 | choloylglycine hydrolase family protein | - |
| CCX78_RS08855 (LASAK_01757) | - | 1730248..1730874 (+) | 627 | WP_231952334.1 | DUF1361 domain-containing protein | - |
| CCX78_RS08860 (LASAK_01758) | - | 1730944..1731480 (-) | 537 | WP_016264496.1 | DUF308 domain-containing protein | - |
| CCX78_RS08865 (LASAK_01759) | clpE | 1731515..1733638 (-) | 2124 | WP_016264495.1 | AAA family ATPase | Regulator |
| CCX78_RS08870 (LASAK_01760) | - | 1733919..1736507 (-) | 2589 | WP_096585620.1 | efflux RND transporter permease subunit | - |
| CCX78_RS08875 (LASAK_01761) | - | 1736614..1737099 (+) | 486 | WP_096585623.1 | TetR/AcrR family transcriptional regulator | - |
| CCX78_RS10540 (LASAK_01762) | - | 1737170..1738147 (-) | 978 | WP_269458949.1 | cation:proton antiporter | - |
Sequence
Protein
Download Length: 707 a.a. Molecular weight: 78445.88 Da Isoelectric Point: 4.7412
>NTDB_id=57788 CCX78_RS08865 WP_016264495.1 1731515..1733638(-) (clpE) [Latilactobacillus sakei strain LK-145]
MANMYGNDPFFNNDMDDIFNQVFRRMGNSESARYVINGRELSPDEFAQYRATGKLPNREKEIEIKQNGEHALKKGGILEK
LGRNLTQEARDGLLDPVIGRYNEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQEIVAGKVPETIKDKEIYSIDLS
SLEAGTQYRGSFEENIKNLIKEVKAAGNVILFFDEIHQILGIGSTGGEDGGKGLADIIKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNDVLVNEPSAADTVKILQGIKGLYEKHHHIELPDDVLKAAVDYSVQYIPQRTLPDKAIDLLDMTAAHL
AAKRPETDKAKLAAELKQLEADKAEAVEAENYQAAEDLKVRIEKIKTQLENNDQHAAVMIATVDDIAQSVERLTGIPVAK
MGSNDIQRLKNLGQRLKDKVIGQDEAVEMVARAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNKEAII
RLDMSEYADRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLFDEIEKADPQVLTLLLQVMDDGRLTDGQGNVIDF
KNTVIIATSNAGFGNEKLTMNDQEDAKLLDKLAPYFRPEFLNRFNGIVEFTHLTKADLSQIVDLMLTNVEQTLAKKELTL
VVSKEAKDWLMEEGYDEAMGARPLRRVIEQQIRDKVTDFYLDHADVKDLKADLVDDQIVIQAVDSEN
MANMYGNDPFFNNDMDDIFNQVFRRMGNSESARYVINGRELSPDEFAQYRATGKLPNREKEIEIKQNGEHALKKGGILEK
LGRNLTQEARDGLLDPVIGRYNEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQEIVAGKVPETIKDKEIYSIDLS
SLEAGTQYRGSFEENIKNLIKEVKAAGNVILFFDEIHQILGIGSTGGEDGGKGLADIIKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNDVLVNEPSAADTVKILQGIKGLYEKHHHIELPDDVLKAAVDYSVQYIPQRTLPDKAIDLLDMTAAHL
AAKRPETDKAKLAAELKQLEADKAEAVEAENYQAAEDLKVRIEKIKTQLENNDQHAAVMIATVDDIAQSVERLTGIPVAK
MGSNDIQRLKNLGQRLKDKVIGQDEAVEMVARAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNKEAII
RLDMSEYADRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLFDEIEKADPQVLTLLLQVMDDGRLTDGQGNVIDF
KNTVIIATSNAGFGNEKLTMNDQEDAKLLDKLAPYFRPEFLNRFNGIVEFTHLTKADLSQIVDLMLTNVEQTLAKKELTL
VVSKEAKDWLMEEGYDEAMGARPLRRVIEQQIRDKVTDFYLDHADVKDLKADLVDDQIVIQAVDSEN
Nucleotide
Download Length: 2124 bp
>NTDB_id=57788 CCX78_RS08865 WP_016264495.1 1731515..1733638(-) (clpE) [Latilactobacillus sakei strain LK-145]
ATGGCAAATATGTACGGAAATGACCCATTTTTTAATAATGATATGGATGATATCTTCAATCAAGTTTTTAGAAGAATGGG
GAATTCAGAGTCAGCGCGATATGTGATTAACGGACGAGAATTATCACCGGATGAGTTTGCTCAGTATCGGGCAACTGGTA
AATTACCTAATCGAGAAAAAGAAATTGAAATTAAGCAAAATGGTGAACATGCTCTTAAAAAAGGTGGCATTCTTGAAAAA
TTAGGTCGAAACTTAACCCAGGAAGCACGGGATGGTTTATTAGACCCTGTCATTGGCCGGTATAATGAAATCCAAGAAAC
AGCCGAAATATTAAGTCGCCGGACTAAAAATAATCCAATTCTAGTTGGTGATGCAGGTGTTGGGAAGACCGCGGTGGTTG
AAGGATTAGCACAAGAAATTGTGGCTGGAAAAGTGCCTGAAACCATTAAAGATAAAGAAATCTACTCAATCGATTTGTCA
TCACTAGAAGCCGGGACACAATATCGGGGCTCGTTTGAAGAAAATATTAAAAATTTAATTAAAGAAGTAAAAGCAGCCGG
GAACGTCATTCTCTTTTTCGATGAAATTCATCAGATTTTAGGGATAGGTTCAACCGGTGGCGAAGATGGCGGCAAAGGGT
TAGCTGATATTATCAAGCCAGCTTTATCACGTGGTGAATTGACGGTCATCGGTGCGACAACGCAAGATGAATATCGCAAT
ACTATTTTGAAAAATGCCGCGTTAGCAAGACGGTTCAACGATGTGCTGGTGAATGAACCTAGCGCAGCAGATACGGTTAA
AATCTTGCAAGGGATTAAAGGTTTGTACGAAAAACACCATCACATTGAACTACCAGATGATGTTTTGAAAGCGGCTGTTG
ACTATTCTGTTCAATATATTCCACAACGGACGTTGCCAGATAAGGCAATCGATTTATTAGATATGACCGCCGCTCATTTA
GCAGCTAAACGGCCAGAAACAGATAAAGCTAAATTGGCAGCTGAACTTAAACAGTTAGAAGCGGATAAAGCCGAAGCTGT
CGAGGCGGAGAATTATCAAGCTGCTGAAGATTTAAAAGTAAGGATTGAGAAGATTAAGACGCAATTAGAAAATAATGATC
AGCATGCGGCCGTAATGATTGCGACTGTTGATGATATTGCGCAATCTGTTGAAAGATTAACTGGGATTCCAGTTGCTAAA
ATGGGGAGCAATGATATTCAACGCTTGAAGAACTTAGGTCAACGCTTAAAAGATAAGGTCATTGGTCAAGATGAAGCTGT
TGAAATGGTAGCGCGGGCTATTCGCAGAAATCGAGCAGGTTTTTCGGAAGGTAATCAACCAATTGGGAGCTTCTTATTTG
TTGGTCCAACTGGGGTTGGGAAAACTGAATTAGCAAAACAATTAGCCTTAGATATGTTTGGTAACAAAGAAGCGATTATC
CGTTTGGATATGAGTGAATATGCTGACCGGACAGCTGTTTCTAAATTGATTGGGACGACAGCCGGTTATGTTGGCTATGA
CGATAATTCCAATACATTAACCGAACGCGTTCGTCGTAACCCATATTCAATTGTCTTGTTTGATGAAATTGAAAAAGCTG
ATCCACAAGTTTTAACATTATTACTACAAGTGATGGACGATGGTCGCTTAACGGATGGTCAAGGGAACGTGATCGACTTT
AAGAACACGGTGATTATCGCGACATCTAATGCCGGTTTTGGTAATGAAAAATTAACCATGAACGACCAAGAAGATGCTAA
GTTATTAGATAAGTTAGCACCATACTTCAGACCAGAATTCTTAAACCGGTTTAACGGGATTGTTGAATTTACGCATTTAA
CGAAAGCTGACTTGTCACAAATTGTGGATTTAATGTTAACTAACGTTGAACAAACATTAGCTAAAAAAGAATTAACCTTA
GTTGTTTCAAAAGAAGCTAAGGATTGGTTGATGGAAGAAGGCTACGATGAGGCAATGGGGGCTCGTCCATTAAGACGGGT
TATTGAACAACAAATCAGAGATAAGGTCACTGATTTTTACCTCGATCATGCAGATGTCAAAGACTTAAAGGCAGATTTAG
TTGATGATCAGATTGTCATTCAAGCGGTCGACTCTGAAAACTAA
ATGGCAAATATGTACGGAAATGACCCATTTTTTAATAATGATATGGATGATATCTTCAATCAAGTTTTTAGAAGAATGGG
GAATTCAGAGTCAGCGCGATATGTGATTAACGGACGAGAATTATCACCGGATGAGTTTGCTCAGTATCGGGCAACTGGTA
AATTACCTAATCGAGAAAAAGAAATTGAAATTAAGCAAAATGGTGAACATGCTCTTAAAAAAGGTGGCATTCTTGAAAAA
TTAGGTCGAAACTTAACCCAGGAAGCACGGGATGGTTTATTAGACCCTGTCATTGGCCGGTATAATGAAATCCAAGAAAC
AGCCGAAATATTAAGTCGCCGGACTAAAAATAATCCAATTCTAGTTGGTGATGCAGGTGTTGGGAAGACCGCGGTGGTTG
AAGGATTAGCACAAGAAATTGTGGCTGGAAAAGTGCCTGAAACCATTAAAGATAAAGAAATCTACTCAATCGATTTGTCA
TCACTAGAAGCCGGGACACAATATCGGGGCTCGTTTGAAGAAAATATTAAAAATTTAATTAAAGAAGTAAAAGCAGCCGG
GAACGTCATTCTCTTTTTCGATGAAATTCATCAGATTTTAGGGATAGGTTCAACCGGTGGCGAAGATGGCGGCAAAGGGT
TAGCTGATATTATCAAGCCAGCTTTATCACGTGGTGAATTGACGGTCATCGGTGCGACAACGCAAGATGAATATCGCAAT
ACTATTTTGAAAAATGCCGCGTTAGCAAGACGGTTCAACGATGTGCTGGTGAATGAACCTAGCGCAGCAGATACGGTTAA
AATCTTGCAAGGGATTAAAGGTTTGTACGAAAAACACCATCACATTGAACTACCAGATGATGTTTTGAAAGCGGCTGTTG
ACTATTCTGTTCAATATATTCCACAACGGACGTTGCCAGATAAGGCAATCGATTTATTAGATATGACCGCCGCTCATTTA
GCAGCTAAACGGCCAGAAACAGATAAAGCTAAATTGGCAGCTGAACTTAAACAGTTAGAAGCGGATAAAGCCGAAGCTGT
CGAGGCGGAGAATTATCAAGCTGCTGAAGATTTAAAAGTAAGGATTGAGAAGATTAAGACGCAATTAGAAAATAATGATC
AGCATGCGGCCGTAATGATTGCGACTGTTGATGATATTGCGCAATCTGTTGAAAGATTAACTGGGATTCCAGTTGCTAAA
ATGGGGAGCAATGATATTCAACGCTTGAAGAACTTAGGTCAACGCTTAAAAGATAAGGTCATTGGTCAAGATGAAGCTGT
TGAAATGGTAGCGCGGGCTATTCGCAGAAATCGAGCAGGTTTTTCGGAAGGTAATCAACCAATTGGGAGCTTCTTATTTG
TTGGTCCAACTGGGGTTGGGAAAACTGAATTAGCAAAACAATTAGCCTTAGATATGTTTGGTAACAAAGAAGCGATTATC
CGTTTGGATATGAGTGAATATGCTGACCGGACAGCTGTTTCTAAATTGATTGGGACGACAGCCGGTTATGTTGGCTATGA
CGATAATTCCAATACATTAACCGAACGCGTTCGTCGTAACCCATATTCAATTGTCTTGTTTGATGAAATTGAAAAAGCTG
ATCCACAAGTTTTAACATTATTACTACAAGTGATGGACGATGGTCGCTTAACGGATGGTCAAGGGAACGTGATCGACTTT
AAGAACACGGTGATTATCGCGACATCTAATGCCGGTTTTGGTAATGAAAAATTAACCATGAACGACCAAGAAGATGCTAA
GTTATTAGATAAGTTAGCACCATACTTCAGACCAGAATTCTTAAACCGGTTTAACGGGATTGTTGAATTTACGCATTTAA
CGAAAGCTGACTTGTCACAAATTGTGGATTTAATGTTAACTAACGTTGAACAAACATTAGCTAAAAAAGAATTAACCTTA
GTTGTTTCAAAAGAAGCTAAGGATTGGTTGATGGAAGAAGGCTACGATGAGGCAATGGGGGCTCGTCCATTAAGACGGGT
TATTGAACAACAAATCAGAGATAAGGTCACTGATTTTTACCTCGATCATGCAGATGTCAAAGACTTAAAGGCAGATTTAG
TTGATGATCAGATTGTCATTCAAGCGGTCGACTCTGAAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpE | Streptococcus mutans UA159 |
49.214 |
89.958 |
0.443 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
48.889 |
89.109 |
0.436 |
| clpE | Streptococcus pneumoniae Rx1 |
47.504 |
87.836 |
0.417 |
| clpE | Streptococcus pneumoniae D39 |
47.504 |
87.836 |
0.417 |
| clpE | Streptococcus pneumoniae R6 |
47.504 |
87.836 |
0.417 |
| clpE | Streptococcus pneumoniae TIGR4 |
47.343 |
87.836 |
0.416 |
| clpC | Streptococcus pneumoniae Rx1 |
43.862 |
94.484 |
0.414 |
| clpC | Streptococcus pneumoniae D39 |
43.862 |
94.484 |
0.414 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.154 |
91.938 |
0.406 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
45.032 |
88.26 |
0.397 |
| clpC | Streptococcus thermophilus LMD-9 |
44.75 |
87.553 |
0.392 |
| clpC | Streptococcus thermophilus LMG 18311 |
44.013 |
87.412 |
0.385 |
| clpC | Streptococcus mutans UA159 |
43.851 |
87.412 |
0.383 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
41.64 |
87.977 |
0.366 |