Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KRO90_RS05050 Genome accession   NZ_CP076736
Coordinates   1056733..1057551 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain X4-201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1051733..1062551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRO90_RS05015 (KRO90_04985) - 1052316..1052445 (-) 130 Protein_960 hypothetical protein -
  KRO90_RS05020 (KRO90_04990) rpoZ 1052484..1052762 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KRO90_RS05025 (KRO90_04995) gmk 1052835..1053464 (-) 630 WP_000015937.1 guanylate kinase -
  KRO90_RS05030 (KRO90_05000) ispH 1053587..1054537 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KRO90_RS05035 (KRO90_05005) fimU 1054707..1055180 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  KRO90_RS05040 (KRO90_05010) pilV 1055174..1055734 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  KRO90_RS05045 (KRO90_05015) pilW 1055735..1056736 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  KRO90_RS05050 (KRO90_05020) pilX 1056733..1057551 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KRO90_RS05055 (KRO90_05025) pilY1 1057563..1061417 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  KRO90_RS05060 (KRO90_05030) pilY2 1061430..1061912 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  KRO90_RS05065 (KRO90_05035) pilE 1061909..1062334 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=577864 KRO90_RS05050 WP_000149374.1 1056733..1057551(+) (pilX) [Acinetobacter baumannii strain X4-201]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=577864 KRO90_RS05050 WP_000149374.1 1056733..1057551(+) (pilX) [Acinetobacter baumannii strain X4-201]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993