Detailed information NTG0577844

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KRO90_RS01490
• Genome accession: NZ_CP076736
• Coordinates: 318521..319381 (+)
• Length: 286 a.a.
• NCBI ID: WP_279446766.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain X4-201
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 313521..324381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KRO90_RS01470 (KRO90_01465)	secG	314125..314454 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
KRO90_RS01475 (KRO90_01470)	tpiA	314467..315261 (-)	795	WP_078202916.1	triose-phosphate isomerase	-
KRO90_RS01480 (KRO90_01475)	pilB	315553..317265 (+)	1713	WP_001274988.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KRO90_RS01485 (KRO90_01480)	pilC	317295..318521 (+)	1227	WP_279446765.1	type II secretion system F family protein	Machinery gene
KRO90_RS01490 (KRO90_01485)	pilD	318521..319381 (+)	861	WP_279446766.1	A24 family peptidase	Machinery gene
KRO90_RS01495 (KRO90_01490)	coaE	319383..319979 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
KRO90_RS01500 (KRO90_01495)	-	319976..320890 (-)	915	WP_000075015.1	DMT family transporter	-
KRO90_RS01505 (KRO90_01500)	rlmB	320926..321675 (-)	750	WP_279446767.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
KRO90_RS01510 (KRO90_01505)	-	321777..322103 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
KRO90_RS01515 (KRO90_01510)	-	322180..323490 (-)	1311	WP_272412430.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32170.58 Da
• Isoelectric Point: 7.5058

>NTDB_id=577844 KRO90_RS01490 WP_279446766.1 318521..319381(+) (pilD) [Acinetobacter baumannii strain X4-201]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQR
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=577844 KRO90_RS01490 WP_279446766.1 318521..319381(+) (pilD) [Acinetobacter baumannii strain X4-201]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACGG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437