Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   CCX78_RS08200 Genome accession   NZ_AP017931
Coordinates   1578836..1581133 (+) Length   765 a.a.
NCBI ID   WP_096585444.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1573836..1586133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS08180 (LASAK_01613) - 1574411..1575049 (-) 639 WP_231952326.1 pentapeptide repeat-containing protein -
  CCX78_RS10445 (LASAK_01614) - 1575111..1575326 (-) 216 WP_011374039.1 hypothetical protein -
  CCX78_RS08190 (LASAK_01615) - 1575930..1577255 (-) 1326 Protein_1570 MATE family efflux transporter -
  CCX78_RS10350 (LASAK_01616) - 1577225..1577446 (-) 222 WP_143457235.1 hypothetical protein -
  CCX78_RS08195 (LASAK_01617) trpS 1577464..1578480 (-) 1017 WP_096585441.1 tryptophan--tRNA ligase -
  CCX78_RS08200 (LASAK_01618) helD 1578836..1581133 (+) 2298 WP_096585444.1 RNA polymerase recycling motor HelD Machinery gene
  CCX78_RS08210 (LASAK_01619) - 1581341..1582222 (-) 882 WP_231952327.1 Cof-type HAD-IIB family hydrolase -
  CCX78_RS08215 (LASAK_01620) - 1582382..1582597 (+) 216 WP_011374032.1 DUF2187 family protein -
  CCX78_RS08220 (LASAK_01621) - 1582646..1583497 (-) 852 WP_056947760.1 YitT family protein -
  CCX78_RS08225 (LASAK_01622) - 1583571..1584992 (-) 1422 WP_096585447.1 C69 family dipeptidase -
  CCX78_RS08230 (LASAK_01623) - 1585050..1585403 (-) 354 WP_011374029.1 PqqD family protein -

Sequence

Protein


Download         Length: 765 a.a.        Molecular weight: 87032.38 Da        Isoelectric Point: 4.6827

>NTDB_id=57784 CCX78_RS08200 WP_096585444.1 1578836..1581133(+) (helD) [Latilactobacillus sakei strain LK-145]
MLQEDTQQQEQARVDLTVDQVNQRLTVINQQLANAYNETKDIEQRYGDTTKVNITEVDDRMETNAAVQQQKQLVAAAVEN
EKLLTTQQKRLTDLVDSPYFGRIDINEDGEEESLYIGTATFINEQDQFLVYDWRAPIASIYYNGTLGTVSYDTPNGPVKV
DLTLKRQFKIKNGQIEHLFDTNETVGDELLQAVLGQQSDEYMQNIVATIQKEQNDIIRDTTADLLIVQGVAGSGKTSAVL
QRIAFLLYHSRSHLEADQMVLFSPNRLFSHYISDVLPSLGEKNMRQVTMAEFLSHRFSGLQVETLFDRFEKDQASFPEMT
QAMRRFKESAPFMQQIAAYVKQVSTQPLAFNDLYFEDRPFFTKAQINKIYLDLPHNMRPGDKFIATKNTLIKRLKRQINL
EVHLDWVAEKIDTLSDDDYRAIVGDREFDSGDLEQAFIAREIVQNYFADLYDAIYNDYFLDVYTEYQNFLRTACPTIIPV
AVWEAMIETVAQNNERHLVGLSDAAPILYLRDLLTDSGQNHSIQYLFVDEMQDYSIAQFVYLQHAFPNAKFTVLGDYAQD
VFTATYQAGNFIERLSAAFPKLKTNQISLTKSYRATAPITNFAKALLPKETALQAFSRDGRLPRVITTTKESSLNALTRE
IFHLQKRHATIAILTKDQQMARQLFASLAPDDQVTLISETTRSLPKGVLVLPLYLAKGLEFDAVIGYDISATTFGQASDV
DLLYTLMTRAMHDLTLLGIGTLSPLITNLDPQYYQNVTTTKETIA

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=57784 CCX78_RS08200 WP_096585444.1 1578836..1581133(+) (helD) [Latilactobacillus sakei strain LK-145]
ATGCTACAAGAAGATACGCAACAACAAGAACAAGCCCGTGTTGATTTAACGGTTGACCAAGTCAATCAACGGCTAACGGT
TATCAACCAACAATTGGCCAACGCCTATAATGAAACTAAAGATATTGAACAACGTTATGGTGATACTACCAAGGTTAACA
TTACGGAAGTCGATGACCGGATGGAAACCAATGCCGCTGTCCAACAGCAAAAGCAACTGGTCGCAGCTGCCGTTGAAAAC
GAGAAACTCCTAACGACACAACAAAAACGACTAACGGATTTAGTTGACTCCCCCTATTTTGGTCGGATTGATATCAATGA
AGACGGTGAAGAAGAATCACTCTACATCGGAACCGCCACTTTTATCAACGAACAAGACCAATTTTTAGTTTATGATTGGC
GAGCACCCATCGCTAGTATCTATTATAACGGCACACTGGGAACCGTCAGTTACGATACGCCCAACGGTCCCGTTAAAGTT
GACTTAACTTTAAAACGGCAATTTAAGATTAAAAACGGCCAGATTGAACACCTCTTTGATACAAATGAAACGGTTGGCGA
CGAACTCCTGCAAGCCGTCCTCGGCCAACAAAGTGATGAGTACATGCAAAATATCGTTGCAACAATTCAAAAAGAACAAA
ATGATATTATCCGTGATACGACTGCCGATTTACTAATTGTCCAAGGCGTCGCCGGTAGTGGTAAGACTTCTGCGGTTTTA
CAACGCATCGCTTTCTTACTCTATCACAGTCGTAGTCACTTAGAAGCCGATCAAATGGTTCTTTTTTCACCTAACCGTTT
ATTCAGCCATTACATTTCTGACGTTCTCCCCAGCTTAGGCGAGAAAAACATGCGCCAAGTGACGATGGCTGAATTTTTAA
GTCATCGTTTCTCGGGGCTTCAAGTTGAAACACTCTTCGATCGTTTTGAAAAGGACCAAGCGAGTTTCCCAGAAATGACG
CAAGCAATGCGCCGCTTTAAAGAAAGTGCACCCTTTATGCAACAAATTGCAGCCTACGTTAAACAGGTTTCTACACAGCC
ATTGGCTTTCAATGATCTCTATTTCGAAGACAGACCTTTCTTCACAAAAGCGCAAATTAATAAAATTTATCTTGATCTCC
CACATAATATGCGTCCCGGTGATAAATTCATTGCTACTAAAAACACCCTTATTAAGCGTCTCAAACGCCAAATTAATTTA
GAGGTGCATCTTGATTGGGTTGCTGAAAAAATTGATACCTTATCAGATGATGACTACCGCGCCATCGTCGGTGATCGCGA
ATTTGATTCTGGCGATTTAGAACAAGCATTTATTGCCCGGGAAATTGTTCAAAATTATTTTGCTGATTTATACGATGCTA
TTTATAACGATTACTTTTTGGATGTATATACTGAATATCAAAACTTTTTACGGACAGCTTGTCCGACTATAATTCCGGTT
GCCGTTTGGGAAGCAATGATTGAAACAGTCGCTCAAAATAATGAACGCCATCTCGTCGGTTTAAGTGACGCAGCGCCAAT
TTTGTATCTCCGTGATTTATTAACCGATAGTGGTCAAAATCACAGTATCCAATACTTATTCGTCGATGAGATGCAAGATT
ATAGCATTGCGCAATTTGTCTATCTCCAACATGCTTTCCCGAATGCTAAATTCACCGTACTTGGCGATTACGCGCAAGAC
GTCTTTACCGCTACTTATCAAGCCGGTAATTTCATTGAACGCCTCAGTGCGGCTTTTCCAAAATTGAAAACTAACCAAAT
TAGTTTGACAAAGAGCTATCGCGCGACTGCCCCCATCACGAATTTTGCAAAAGCCTTATTGCCTAAAGAAACAGCCTTGC
AAGCCTTTAGTCGTGATGGACGGCTCCCTCGTGTCATCACAACCACTAAGGAATCTAGTTTAAACGCCTTAACGCGAGAA
ATTTTCCACCTACAAAAACGGCATGCAACTATCGCCATTTTAACCAAGGATCAACAAATGGCACGCCAACTTTTCGCTAG
CCTTGCCCCTGATGATCAGGTAACGCTCATCTCCGAGACCACCCGCTCATTGCCAAAAGGCGTCTTGGTATTACCGTTAT
ACCTCGCTAAAGGGCTCGAATTCGACGCTGTCATTGGTTACGATATTTCAGCAACAACCTTTGGCCAAGCGAGTGACGTT
GATTTACTCTATACATTGATGACACGTGCAATGCACGATTTAACCTTGTTGGGAATTGGAACCCTCAGTCCACTCATTAC
TAATCTAGACCCTCAATATTATCAAAATGTTACAACCACTAAGGAAACGATTGCCTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(689-736)

AAA domain (AAA_19)

(213-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

36.985

100

0.375

Multiple sequence alignment