Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPN29_RS10735 Genome accession   NZ_CP094374
Coordinates   2256238..2257515 (+) Length   425 a.a.
NCBI ID   WP_064969825.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0509     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2251238..2262515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPN29_RS10710 (MPN29_10695) - 2252581..2253765 (-) 1185 WP_013447219.1 sigma-54 dependent transcriptional regulator -
  MPN29_RS10715 (MPN29_10700) - 2253802..2254458 (-) 657 WP_064969819.1 YggS family pyridoxal phosphate-dependent enzyme -
  MPN29_RS10720 (MPN29_10705) mscL 2254533..2254904 (-) 372 WP_004917723.1 large conductance mechanosensitive channel protein MscL -
  MPN29_RS10725 (MPN29_10710) lgt 2255045..2255896 (-) 852 WP_064969821.1 prolipoprotein diacylglyceryl transferase -
  MPN29_RS10730 (MPN29_10715) yidD 2255904..2256158 (-) 255 WP_064969823.1 membrane protein insertion efficiency factor YidD -
  MPN29_RS10735 (MPN29_10720) rarA 2256238..2257515 (+) 1278 WP_064969825.1 replication-associated recombination protein A Machinery gene
  MPN29_RS10740 (MPN29_10725) - 2257512..2258123 (-) 612 WP_004917730.1 L-threonylcarbamoyladenylate synthase -
  MPN29_RS10745 (MPN29_10730) - 2258107..2258913 (-) 807 WP_004917734.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  MPN29_RS10750 (MPN29_10735) - 2258942..2259562 (-) 621 WP_014938998.1 CoA pyrophosphatase -
  MPN29_RS10755 (MPN29_10740) - 2259566..2260258 (-) 693 WP_014938997.1 TrkA family potassium uptake protein -
  MPN29_RS10760 (MPN29_10745) - 2260266..2262014 (-) 1749 WP_014938996.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47559.25 Da        Isoelectric Point: 6.7062

>NTDB_id=577781 MPN29_RS10735 WP_064969825.1 2256238..2257515(+) (rarA) [Riemerella anatipestifer strain RCAD0509]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDEAQKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVVLIGATTENPSFEVVSALLSRSQVYILKPLSYE
KLEELATIAVARFNQDENTDFTIENNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSEAILKILQETVPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTMANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEAMAMAKKTAHLPVPLHLRNAPTKLMKEMDYGKDYRYAHAYEGNFVPQEFLPEELSGVS
FYRSGDNATERKIKEQISKKWGDKY

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=577781 MPN29_RS10735 WP_064969825.1 2256238..2257515(+) (rarA) [Riemerella anatipestifer strain RCAD0509]
TTGAATTCAAATATTCCTTTAGCAGAGAAATTACGCCCTAAAACCTTAGATGAAATGCTTGGGCAAGAACATCTTACAGG
TAAAGACGGAACGATAAGAAAAATGTTGGATACTGACCGACTTAATTCTCTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTGAAA
GAGGTAAGAGAAGTGATAGATGAGGCCCAAAAGCAACATTTGTTTTCTGGTAAATCTCCTATTTTATTTATAGATGAAAT
TCATAGATTTAACAAGTCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGCTGGGTGGTTTTGATAGGAGCAACTA
CCGAAAATCCTAGCTTTGAGGTGGTTTCGGCATTATTGTCTCGTTCTCAAGTTTATATTTTGAAACCATTGAGTTACGAA
AAATTGGAAGAACTGGCTACTATTGCGGTCGCTCGTTTTAATCAAGATGAAAATACAGATTTTACTATTGAAAACAATCA
AGGGTTTATACAATATTCGGGAGGCGATGCTAGAAAACTCATTAACTCAGTAGAGTGGGTGCTTAATCAGTATAAAGGCT
CTGGGCAAAACCAGTTATCTAGTGAGGCTATTCTGAAAATTTTACAAGAAACCGTACCTGTTTATGATAAAAATGGTGAG
CAACATTATGATGTAATTTCAGCTTTTATTAAATCTATTAGAGGGAGTGATGTTAATGCCGCTTTGTACTGGCTAGGGAG
AATGCTCGTGGGAGGCGAAGATATTAAATTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGTTTGGCTA
ACCCTAACGCTCTCACAATGGCTAACAGTTGTTTTCAATCAGTTAATGTTATAGGTTATCCAGAATCTCGTATTATCCTT
AGCGAATGTGTGATTTATTTAGCGGCTTCACCTAAGAGTAATTCGGCGTATCAAGCCATTAATGAGGCAATGGCAATGGC
GAAAAAAACAGCTCATTTGCCCGTGCCATTGCACTTAAGAAATGCTCCTACAAAACTGATGAAAGAAATGGACTATGGTA
AAGATTACCGCTACGCTCACGCCTATGAGGGAAATTTTGTGCCACAAGAATTTCTTCCTGAAGAATTATCTGGAGTTTCT
TTTTATCGTTCAGGAGATAATGCCACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAGTGGGGCGATAAATACTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(44-155)

MgsA AAA+ ATPase C terminal (MgsA_C)

(255-419)

AAA C-terminal domain (AAA_assoc_2)

(187-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.049

95.765

0.384